Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E374520

Search information 
Request: 374520Match: SGN-E374520
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182064Clone name: TUS-38-J14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182064 is on microarray TOM1 spot ID 1-1-3.2.10.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C83928 [cLET-26-L10] Trace: SGN-T108915 EST: SGN-E296863 Direction: 5' Facility: TIGR
Clone: SGN-C182064 [TUS-38-J14] Trace: SGN-T187789 EST: SGN-E374519 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E374520Length: 672 bp (912 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E374520 [] (trimmed) AATGTGGACAAGAAAATTAGTTGGAGTAGCGGGGAATGATATACTTTACAACCCACAAAAGAGTTGCTGTTTGAAAAACACTTAATTTTTTTTAA
AAAAGGGAAAAACACTTTCAGAGTCTATATTTAAATTTTGTTGAGCTGCAGAAGGACTAATTATCTGTCGGCGCCAGGTTGCTTTCTGTCGGCAT
CAATGGCGATGATTATGAGAATAAGAAATCCCTTCCTTCCTTGTCTATTAAATTAATAAATTAAACTAACATCAGCGATTAAGTTTCAGTCGTTA
ATGTGGGAGGGAATCAAATGCCAATGAAGTCTCGAATCCATTCATCAGCTTCAATGTGTCAAAATATATATCCCAACCTTTGCAGCTGAAGTGCT
CGTGGTCGCCAAATGTCAAGGACTCTTGCAGCAATTGTAGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATTCTGCTTCTCATTTGTTGCTT
CTGTATTTTTCGTAAAAGGTTTATTTCAACAACTTCCGACACAGGATCTTCTGATCCATCTGTTCAAGTTGGAAAAAATGCTGGGGTTGAATTGA
CCTCACAAGATGCCAGACGCTTCCACATAGAAGAATTGTCTTTGGCCACAAAAGGTTTTAGTGATAAGAGTTTAATTGGCCAAGGCAAATTTTGG
GAAGTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E374520] SGN-U568812 Tomato 200607 Build 2 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187790 [Download][View] Facility Assigned ID: FA0AAD26DE07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0092 Quality Trim Threshold: 14.5