EST details — SGN-E374718

Search information 
Request: 374718Match: SGN-E374718
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172850Clone name: TUS-14-J16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172850 is on microarray TOM1 spot ID 1-1-1.2.20.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C11040 [cLEC-6-P4] Trace: SGN-T24064 EST: SGN-E202403 Direction: 5' Facility: TIGR
Clone: SGN-C172850 [TUS-14-J16] Trace: SGN-T188027 EST: SGN-E374719 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E374718Length: 549 bp (925 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E374718 [] (trimmed) TATTTGCACACATTGGAAGGATTTCAAAACAACTTCATTACTTTTAATTTTTATATTCAGATCTCATAGCCCTAATGGTTTTAAATAATACTGCT
TGCCCAGATGGGTCAAACAGCATCAATAACATGGTATCCATCTACGAAGAGCTTGAAAGTTTTTACACCTTTTTTTTTAATAAAATCAGCAAAGT
TGCGCGAGGCATCGATTAAAGGATCTTCAGAGACACCGGTGACAAGGATCCCCCAGCCTCGTGTGATCATATCATCTAAATGCTTTGACCCTCCG
TTAAGTAATGGGTTGGAATATTCATGATCATGATCTAGTGTTCCTTTTGGTAAGGACAAGTCAAACATTTTATCAATTGCTTGAAATGGCAAAGT
TGGATCATTTTTTAGCTTCTCTTCAGATTCTGTCCTATTTTTTCCACTGAAATATGGTTGATGCAAGATAAGCCCTTTGATCTTTACTGGTTTTA
GTTCTTTGTCTGAAAAAGATGCTTCGCGTAGCCCTGCATGGTAAGCCAAGTTTTCACCAGAACTTGATCCAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E374718] SGN-U578033 Tomato 200607 Build 2 77 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T188026 [Download][View] Facility Assigned ID: FA0AAD2DE08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.950 Expected Error Rate: 0.0357 Quality Trim Threshold: 14.5