EST details — SGN-E374854
Search information |
Request: 374854 | Match: SGN-E374854 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C173159 | Clone name: TUS-15-G13 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173159 is on microarray TOM1 spot ID 1-1-4.3.20.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C1740 [cLEC-13-L6] | Trace: SGN-T26035 | EST: SGN-E204282 | Direction: 5' | Facility: TIGR |
Clone: SGN-C173159 [TUS-15-G13] | Trace: SGN-T188499 | EST: SGN-E374855 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E374854 | Length: 743 bp (908 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E374854 [] (trimmed)
GATTTTAGAGGAAGTCAGCAGCCAACTAAGAATTATATCAGATATGAAACACGTCAAAAGCGTGCTGACTCAAAAAAAGCTTTGAAAAATCTTCT
CTTTTATGGGGCATCTGGAAACTCTTTTGAGAATGAATCTTCAACAATAAATGATAGATGGGATATGGATCGGGATGATCGTTCAGAGAAGAAAA
GTGAATATAAGTCCGCTGCTCGTCTTAGAGATCGCTCAAGGAGAAGGATGCGAAAAATGAAGAAACGGAGATTATATGAAGAATTCGATGAATAT
CCTGAATCAGTATTCGAAGCAACTTTTGGTGATAAGTGGTACACTTGGTCTTTTAGGCCTGGTAAATCATCTACTTTTGAAGATATGTTCTCCCG
AAGACAAGAAACAGACTGGTCAGAACAAAGGCATTACAGATGGGATAATGAAACTGAAAACGAGACACATACAGAATCCAAATATGAATCGTGTC
ATATAGGTTCTTCCTCAGAAAGAACAATTCTCGGTTTGCCCCCAAGAGGTCCTCTGAAGATTGAGGATGTCAAGAATGCTTTCCGCTTATCAGCA
TTAAAGTGGCATCCTGATAAACATCAAGGCCCTTCACAGGCAGCAGCAGAAGAGAAATTCAAAACTTGTGTCACTGCATACAAGTCATTGTGCAA
CGCGTTCTCCCCAGCTTAACCTTTATCTGACGTATCTATGGCTTCTTTTCTTGGGAGTTTCAGAAGCCAACATCACCA
CTTTTATGGGGCATCTGGAAACTCTTTTGAGAATGAATCTTCAACAATAAATGATAGATGGGATATGGATCGGGATGATCGTTCAGAGAAGAAAA
GTGAATATAAGTCCGCTGCTCGTCTTAGAGATCGCTCAAGGAGAAGGATGCGAAAAATGAAGAAACGGAGATTATATGAAGAATTCGATGAATAT
CCTGAATCAGTATTCGAAGCAACTTTTGGTGATAAGTGGTACACTTGGTCTTTTAGGCCTGGTAAATCATCTACTTTTGAAGATATGTTCTCCCG
AAGACAAGAAACAGACTGGTCAGAACAAAGGCATTACAGATGGGATAATGAAACTGAAAACGAGACACATACAGAATCCAAATATGAATCGTGTC
ATATAGGTTCTTCCTCAGAAAGAACAATTCTCGGTTTGCCCCCAAGAGGTCCTCTGAAGATTGAGGATGTCAAGAATGCTTTCCGCTTATCAGCA
TTAAAGTGGCATCCTGATAAACATCAAGGCCCTTCACAGGCAGCAGCAGAAGAGAAATTCAAAACTTGTGTCACTGCATACAAGTCATTGTGCAA
CGCGTTCTCCCCAGCTTAACCTTTATCTGACGTATCTATGGCTTCTTTTCTTGGGAGTTTCAGAAGCCAACATCACCA
Unigenes |
Current Unigene builds | |||||
[SGN-E374854] | SGN-U583864 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T188498 [Download][View] | Facility Assigned ID: FA0AAD3AD07FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.965 | Expected Error Rate: 0.0035 | Quality Trim Threshold: 14.5 |