Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E375493

Search information 
Request: 375493Match: SGN-E375493
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180614Clone name: TUS-34-N4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180614 is on microarray TOM1 spot ID 1-1-5.2.19.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C180614 [TUS-34-N4] Trace: SGN-T187262 EST: SGN-E375494 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E375493Length: 711 bp (859 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E375493 [] (trimmed) TTTTTTCTCGAGATCCGCTCCATCCATTATATTTGTTTTTTAAACAGATTCCTTGCGTGGGCAGCGAGGAGAAGGAAATGAAAGTGAAGCTTCTC
GACGTATTAAAACAGAACTCCTTGTGCAGATGCAGGGTGTTGGTCACAATGATGATAAAGTTCTTGTACTTGCGGCAACAAATACACCCTATTCC
CTAGATCAGGCTATACGGCGAAGATTTGATAAGCGTATCTACATTCCGCTCCCTGATTTGAAGGCACGGCAACACATGTTCAAAGTTCATTTAGG
TGATACCCCCCATTTCTTGAACGAGTGTGACTTTGAAGACCTGGCCCGTAAGACAGAAGGTTTTTCTGGTTCAGATGTTTCTGTTTGTGTCAAGG
ACGTGCTATTTGAACCTGTACGTAAGACACAAGATGCTGTGTTCTTTACTCAAACTTCTAATGGTACCTGGATTCCATGCGGACCGAAGCAACGG
GGTGCTGTGCAGACAACTATGCAGGAACTTGCTGCTAAAGGACTCGCGTCCCAGATCATCCCGCCACCCATTACAAAGACTGATTTTGATAAGGT
TCTTGCTCGTCAAAGGCCAACAGTTAGTAAATCCGACCTTGAAGTGCATGACAGATTCACGAAGGAATTTGGAGAAGAAGGTTGAAGAGATTGAT
GTGTTTCCGATTACTACTACGCCTGGAGTTGCCCTGATTTGTATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375493] SGN-U573760 Tomato 200607 Build 2 40 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187261 [Download][View] Facility Assigned ID: FA0AAD22DG02FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0075 Quality Trim Threshold: 14.5