EST details — SGN-E375527

Search information 
Request: 375527Match: SGN-E375527
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180342Clone name: TUS-34-B20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180342 is on microarray TOM1 spot ID 1-1-5.2.19.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C32980 [cLEG-24-N14] Trace: SGN-T67834 EST: SGN-E253586 Direction: 5' Facility: TIGR
Clone: SGN-C180342 [TUS-34-B20] Trace: SGN-T187294 EST: SGN-E375526 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E375527Length: 623 bp (888 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E375527 [] (trimmed) GTTTTTGGTAGGTGGCGATGAAGTGTAAAGATCGAATGCACGAGATAGTGAAAAATGAGGTGGAGAAGGAAGAAACTCAATGGAAAGAAGCAATG
ATTCAGAGCTTTTCGTTAATGGATAAAGAAGTTGTTAATTATTCTACTAGCGTACTTCCATCTTCTACCTCAGGTTCCAATTGTAGATGCGAGCT
TCAAACTCCACAGTGCGATGCCGTTGGATCAACTGCCGTCGTTGCCGTTGTAACTCCGGACAAAATCATCGTTTCCAATTGCGGTGATTCTCGTG
CCGTCCTCTGTAGAAACGGCGTCGCTATTCCTCTTTCCGTTGATCATAAGGTTCGTTTTTTGAATTCATTTTAACGTTTCGATAATTTTGAAATG
ATACTAATTCACATTGAATTTTTTGTTTTCTCTCACAGCCGGATCGACCTGATGAATTGAATAGAATACAAGAAGCTGGTGGCCGTGTTATATAT
TGGGACGGAGCTAGAGTTCTCGGCGTTTTAGCAATGTCTCGAGCCATTGGTAAGGCATACACTCTCTAATTGATCTAAATTTGGAAGCAAAAAAT
AAACTCTATAACAACGTTCTAAAATTATCTTTATGAATATTGTCACAGGTGAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375527] SGN-U587913 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187295 [Download][View] Facility Assigned ID: FA0AAD22DA10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0033 Quality Trim Threshold: 14.5