EST details — SGN-E376090

Search information 
Request: 376090Match: SGN-E376090
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182960Clone name: TUS-40-O22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182960 is on microarray TOM1 spot ID 1-1-3.3.5.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C128917 [cTOC-9-I5] Trace: SGN-T137618 EST: SGN-E324609 Direction: 5' Facility: TIGR
Clone: SGN-C182960 [TUS-40-O22] Trace: SGN-T187983 EST: SGN-E376089 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E376090Length: 629 bp (874 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E376090 [] (trimmed) GTTCAGATCTCACTTTGTGCCCTCCACATCTGAGAAAATGGGGGCATACAGAGCCGACGACGATTACGATTACTTGTTCAAGGTGGTGTTGATTG
GTGATTCCGGTGTCGGAAAGTCTAATCTTCTTTCTAGATTCAGTCGTAATGAGTTCAGCCTTGAGTCTAAGTCTACTATCGGTGTTGAGTTCGCT
ACTCGAAGCATTCATGTGGAGGATAAGGTTGTTAAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGATATCGAGCAATCACGAGTGCTTACTA
TCGAGGAGCTGTTGGTGCATTGCTGGTTTATGATGTCACTCGTCATGTGACTTTTGAGAATGTGGAGAGATGGTTGAAGGAGCTCAGAGATCATA
CTGACTCAAACATTGTCATAATGCTTGTGGGAAATAAGGCAGATTTGCGTCACTTACGAGCTGTTTCCACTGAGGATGCCAAGGCATTTGCTGAG
AAGGAAAGTACATTTTTCATGGAAACATCTGCTCTGGAATCCATGAATGTGGAAAACGCCTTCACAGAAGTGCTCACACAAATATACCGTGTCGT
GAGCAAGATAGCTCTTGAAGCAGGAGATGACCCAGCAGCATTGCCCAAGGGACAGACCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376090] SGN-U577848 Tomato 200607 Build 2 13 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187984 [Download][View] Facility Assigned ID: FA0AAD28BH11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.983 Expected Error Rate: 0.0077 Quality Trim Threshold: 14.5