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EST details — SGN-E376543

Search information 
Request: 376543Match: SGN-E376543
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174005Clone name: TUS-17-J19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174005 is on microarray TOM1 spot ID 1-1-6.2.17.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6557 [cLEC-35-M3] Trace: SGN-T30627 EST: SGN-E210279 Direction: 5' Facility: TIGR
Clone: SGN-C174005 [TUS-17-J19] Trace: SGN-T1300 EST: SGN-E378156 Direction: 5' Facility: Giov. Lab
Clone: SGN-C174005 [TUS-17-J19] Trace: SGN-T189158 EST: SGN-E376544 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E376543Length: 718 bp (918 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E376543 [] (trimmed) AATACTAAAACTAAATTTTACTTTGTTCCACTCAAATTTTCATGTACATTTATTTTTACGTTGCAATAACATCTATTACCTTATATTTCTTTCTT
TCATAAATACAAAATACAAGCTCCACATATTTATTGATTGCAGTACCTCCTTGTGACAAAAAGCCAATGGCTGGTGCATAATCTTAATAGTCACG
CAGCAGGAAAATCTTGTGCACCTCGTCTCATTCCGAGTCGATCACTACAATTAAAGCTTGGACTTGACGATTTTCCCACCATCAAATGTTATCAT
CACCTTGCCAATTGCTCTCCTATCTTTGAGAGCAGTAAAAGCAAGATGGGCCTCTGTCAGGCTGAATGTATGAGAAATGTTGACTGTAATCAAAC
CCTTAGACAACCAAGCTAGAAGCTCCTTCAGAGAATCTCCAAGCACATTGGGTTGATGTATCTTATAGCTTCCCCAATACAGTCCGTGAATTGTC
CAGTTCTTCACCAACGCAATGTTGGCTGGGACGACAGGTACTTCCCCACTTGCAAATCCAATAACCAGAATTTGTGCCCCCCAATTTAATAGCTT
TAAGCTATCTTTTGTAAGTTTTCCCCCGACTGGATCATACAAGACATCGACCCCTTTGAGCTTTCTTGACTTCAGGAAGCCCTTTACACTTTCGA
TGACATTTGCACTGCTCAAGTCTACTGCATGATCAACACCTAAAGACTTTAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376543] SGN-U577157 Tomato 200607 Build 2 36 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189157 [Download][View] Facility Assigned ID: FA0AAD5CE10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0043 Quality Trim Threshold: 14.5