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EST details — SGN-E376990

Search information 
Request: 376990Match: SGN-E376990
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174983Clone name: TUS-20-C13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174983 is on microarray TOM1 spot ID 1-1-4.3.13.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23820 [cLED-6-H1] Trace: SGN-T50165 EST: SGN-E233179 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E376990Length: 627 bp (933 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E376990 [] (trimmed) GAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACT
AGGACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGA
CAACAATTCAAGGTGCTCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTT
CTTGCTCGTGGATTTGACCAATCACAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACACGAGAGTCCAACAGAGCCAGATCATGAGGT
ATACCTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAGGGTGCGATATTCAACTTGCTGTGCAGTGACAGAGACAACATGCTAATGTCAA
AGATTGAGAACCATTTCAACCATCAAGTGGCTGAGATTCCCTCATGGAGTAATGAAGAAGATTTCGAAAATGCTCTGAAGATAGCTGGCTTGCTG
TAAGCCGAGTAGAATGTTGGTTTACAGTTCTTAGGAGATATGCTCGCTCGCTCTACT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376990] SGN-U586037 Tomato 200607 Build 2 67 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189745 [Download][View] Facility Assigned ID: FA0AAD8AB07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0053 Quality Trim Threshold: 14.5