EST details — SGN-E377179
Search information |
Request: 377179 | Match: SGN-E377179 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C174568 | Clone name: TUS-19-B6 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C174568 is on microarray TOM1 spot ID 1-1-3.2.15.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C23231 [cLED-4-N20] | Trace: SGN-T49543 | EST: SGN-E231774 | Direction: 5' | Facility: TIGR |
Clone: SGN-C174568 [TUS-19-B6] | Trace: SGN-T189534 | EST: SGN-E377180 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E377179 | Length: 407 bp (920 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E377179 [] (trimmed)
AAAAAAAGCCACGTTTTATTTATTCCATTATATATATAGAAAAAGTACATGGAAACATTATAATCAACATGAACCCTAATTATTTTTAATATGGG
GGTGGTTAATTACTTCAATAATCCAATAATTTAAGTCACTTTGGGAATTTGTACAACATCACCCAAAATGTTAACAAAAAAACGAACTCGATCAC
ATTGAAAATCCTTTGTGACTGGAAAACCATTCAATAATATTGGAATATTAGCTATGGATGGATTTTCCTTTTCAATTATTCCCTTAACATATTGG
GCTGGTACACCAATAAGTTTTGGCCAAAATTGTTTTTCTTTGCACCAAAATGCGGATTCAAATTTTTTTAAAAGTTTTATGACTTTTGGTCCATC
ACTTTTTTTTTGGGCCATGAAAGTTTT
GGTGGTTAATTACTTCAATAATCCAATAATTTAAGTCACTTTGGGAATTTGTACAACATCACCCAAAATGTTAACAAAAAAACGAACTCGATCAC
ATTGAAAATCCTTTGTGACTGGAAAACCATTCAATAATATTGGAATATTAGCTATGGATGGATTTTCCTTTTCAATTATTCCCTTAACATATTGG
GCTGGTACACCAATAAGTTTTGGCCAAAATTGTTTTTCTTTGCACCAAAATGCGGATTCAAATTTTTTTAAAAGTTTTATGACTTTTGGTCCATC
ACTTTTTTTTTGGGCCATGAAAGTTTT
Unigenes |
Current Unigene builds | |||||
[SGN-E377179] | SGN-U578279 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T189533 [Download][View] | Facility Assigned ID: FA0AAD7DA03FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.869 | Expected Error Rate: 0.0187 | Quality Trim Threshold: 12.5 |