EST details — SGN-E377506

Search information 
Request: 377506Match: SGN-E377506
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175247Clone name: TUS-20-N13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175247 is on microarray TOM1 spot ID 1-1-4.2.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24169 [cLED-7-G21] Trace: SGN-T50315 EST: SGN-E231806 Direction: 5' Facility: TIGR
Clone: SGN-C175247 [TUS-20-N13] Trace: SGN-T1356 EST: SGN-E378672 Direction: 5' Facility: Giov. Lab
Clone: SGN-C175247 [TUS-20-N13] Trace: SGN-T190006 EST: SGN-E377507 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377506Length: 468 bp (935 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377506 [] (trimmed) GGAAATCAAAAACCAAAAAAGGCCTAATCCCCACCAAAATTCCCATTTTCAATTTCCCCAAAAAAAATTCCCAGCCCCTCCCTCATTTTTTTCCA
GCCATAAGGGCCTTCCCCCCCCTTGGAAATTTGGGGAAGGGGGGCCCCCCCCCACCACCGGGGGGGCCTTGGGGGTGGGCACCGGGAATTCCCGG
CAAACGGGCCTTAAACCTTTCATTTCCCCCCCCCCTTTTCCCCCCATCACAGGAAAATAGGGCTTCCCCTCGGGAACCCCCCGAACCATCCCCCT
TTCTTTGAAACCCCCCAACCAAATCCCCCCCCCAACGTCTTTTTTGTTCCCGTTCCCGTTCCCCCAATTCCCGTTTTGGTTGGAGAAAATAAATT
AGGGGAAAAAGTGGTTTCCTGTTTGTTGGGGGCCCCCAAAGGGGTTTTGAAATAAACCGTCTCCTTTTTCTTTTTCCTCACCACCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377506] SGN-U600231 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190005 [Download][View] Facility Assigned ID: FA0AAD8CG07FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.855 Expected Error Rate: 0.0335 Quality Trim Threshold: 14.5