EST details — SGN-E377507
Search information |
Request: 377507 | Match: SGN-E377507 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C175247 | Clone name: TUS-20-N13 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175247 is on microarray TOM1 spot ID 1-1-4.2.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C24169 [cLED-7-G21] | Trace: SGN-T50315 | EST: SGN-E231806 | Direction: 5' | Facility: TIGR |
Clone: SGN-C175247 [TUS-20-N13] | Trace: SGN-T1356 | EST: SGN-E378672 | Direction: 5' | Facility: Giov. Lab |
Clone: SGN-C175247 [TUS-20-N13] | Trace: SGN-T190005 | EST: SGN-E377506 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E377507 | Length: 662 bp (874 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E377507 [] (trimmed)
CAGCTATACCACCCACCCATGCACCCACCCACCTATCTAAACCATATTTTTTCCCTTTAATCTAATGGAGCTTCTCTTAGTATTCTCCCAATGTC
CACCATTCCCTCCGCCGCCTACGGCGGTCCACCACCACCTCTAACCACCACCAATACGCTCATCGAGAGCCTCAACAAAATAGGCCTCGGCTACG
CAATTGCAATTGCCCTTGCCTTCCTCTTCCTCCTATCAACTCTCATCCTTTCATCTTACCTATGCTGCCGCTCCGCTGCCTATCGCCGCCGTCAA
GCCCAATCCCAGTCTCGAAACCCGAACACCGGAATTTACATTCCGAGTGTAATTTTCGTTGCTGAGGAAGACGAAAACGACGACGTTTCATCTCA
GAACACTTTCGCGGGCCTCAATCAAGCAGTAATCAACTCTTACCCTAAATTAATTTACTCAAGCAGAAACGGAAATTGGGGAAACGGAAACGGAA
GCAGAAACGACGTCGTGTGTGCGATTTGTTTGTGCGATTACAAGGAAGCGGAGATGTTACGGATGTTACCTGAGTGTAAGCATTATTTTCATGTG
ATGTGCGTAGATGCGTGGCTGAAATTGAATGCTTCATGTCCAGTCTGCCGGAACTCGCCGTTGCCGACGCCGATGTCCACGCCGTTGTCGGA
CACCATTCCCTCCGCCGCCTACGGCGGTCCACCACCACCTCTAACCACCACCAATACGCTCATCGAGAGCCTCAACAAAATAGGCCTCGGCTACG
CAATTGCAATTGCCCTTGCCTTCCTCTTCCTCCTATCAACTCTCATCCTTTCATCTTACCTATGCTGCCGCTCCGCTGCCTATCGCCGCCGTCAA
GCCCAATCCCAGTCTCGAAACCCGAACACCGGAATTTACATTCCGAGTGTAATTTTCGTTGCTGAGGAAGACGAAAACGACGACGTTTCATCTCA
GAACACTTTCGCGGGCCTCAATCAAGCAGTAATCAACTCTTACCCTAAATTAATTTACTCAAGCAGAAACGGAAATTGGGGAAACGGAAACGGAA
GCAGAAACGACGTCGTGTGTGCGATTTGTTTGTGCGATTACAAGGAAGCGGAGATGTTACGGATGTTACCTGAGTGTAAGCATTATTTTCATGTG
ATGTGCGTAGATGCGTGGCTGAAATTGAATGCTTCATGTCCAGTCTGCCGGAACTCGCCGTTGCCGACGCCGATGTCCACGCCGTTGTCGGA
Unigenes |
Current Unigene builds | |||||
[SGN-E377507] | SGN-U582064 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T190006 [Download][View] | Facility Assigned ID: FA0AAD8CG07RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.987 | Expected Error Rate: 0.0017 | Quality Trim Threshold: 14.5 |