EST details — SGN-E377661

Search information 
Request: 377661Match: SGN-E377661
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175268Clone name: TUS-20-O10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175268 is on microarray TOM1 spot ID 1-1-7.3.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24208 [cLED-7-I17] Trace: SGN-T50480 EST: SGN-E231971 Direction: 5' Facility: TIGR
Clone: SGN-C175268 [TUS-20-O10] Trace: SGN-T189873 EST: SGN-E377662 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377661Length: 589 bp (935 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377661 [] (trimmed) AAACAACCCCCCAACTAAAAAGGGTTTATTATCCCTAATCGGGGGGCCATTAACATTAAAAAAAAAACCCCCCCCACCCTTTTTTTTAATAATTT
TCCCCCAAAAAAAAAAAAAAAAAAAAAAAACTCAACTTTTTTTTCTTTTTTTTTTTTTGGGGGTCAAAATTCGGGGATTTTTAACATCAACTTTT
TAAATTTTGGAAAAAAATCTTCCCAAACCCATTTTTTTTCAAGGCTAAAATTAGGGGGGGAATTTTCCCCCTTTAAGGACAAATCAACATAATTG
GTTTTGATTTGGGCCCATACTCCCTGGGCCCAAATTTTGTTTTTATTTTTTAACAAATTATGGGACTTTTTTTGTTTTTTCCACTTTAAACCCGT
GGCAGTTGTTTTTGAACATGAATTTTTTTTTGATGAAGATCCTGGCAAAGAGGGGCTTGGTTGGGGGGGGATTTCGAGGTTTTTTTTAAAATTCA
ATTTTTGGGAAGGTTTATTTTTAAAATTGGGGGCCTCCTCCAAAGGTACCTTACCATTAATTTTTTCGGGCCCCGGTGGGGTTTTTTTAAGGGGA
AATTTTTTTCTTTTTTTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377661] SGN-U601997 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189872 [Download][View] Facility Assigned ID: FA0AAD8BH05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.813 Expected Error Rate: 0.0352 Quality Trim Threshold: 12.5