EST details — SGN-E377716

Search information 
Request: 377716Match: SGN-E377716
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175170Clone name: TUS-20-K8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175170 is on microarray TOM1 spot ID 1-1-1.3.14.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24037 [cLED-7-A19] Trace: SGN-T50464 EST: SGN-E231955 Direction: 5' Facility: TIGR
Clone: SGN-C175170 [TUS-20-K8] Trace: SGN-T189926 EST: SGN-E377715 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377716Length: 697 bp (925 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377716 [] (trimmed) TTGAGACCCAACAAGCTAAGAAAGTTAAGAGTGGTGTTAATGTTCATAAAGATTCGTTAAAGCTTGAGATTGATGAGCAAAACCCAGATCATTAT
TTGGTTTCTTTTGTCTTTGATGCTCTCTTTGATGGAAACATCACAGTGTTTTATTTTGTCAAGGAAGAGCCTCATTGCAGATTTGTTCCAATATA
CCCCCATGTCCATGTACCTATAACAGTTCCTTTCCAGAGAGGACTTGGACAGAAATTTCGTCAGCCTTTTGGGGCAGGCATTGACTTGAGTTTCT
TTGAAATGGACGATCTCTCCGAACTATCATCAGAAGACAGTGTGTTTCCCCTTGTAATAACTGCTACAACCTGCCTTCCATCTGTTTTAACAGAG
GATCATATTAGTGATACTCAACCTAAAACGTCCCTCCATATGCAAATTAGTCAAGCTGTATTGGAGAAGGATCATGAAGGGACTTTCAAAGTGAG
AATAATCAGGCAGATTTTATGGGTTGATAATGTTCGCTATGAGCTGCATGAGATATATGGAATTGGAAACTCTGGCCCAGATTATGAGAACAATG
GCTCAGGCAAGGAGTGTGTAATATGCATGACGGAACCCAAAGATACTGCAGTTCTTCCATGCCGCCATATGTGCATGTGCAGTGGATGTGCAAAC
ACATTGAGACTTCAGTCAAACCGATGCCCAAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377716] SGN-U582147 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189927 [Download][View] Facility Assigned ID: FA0AAD8BF04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0043 Quality Trim Threshold: 14.5