Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E377776

Search information 
Request: 377776Match: SGN-E377776
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175533Clone name: TUS-21-J11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175533 is on microarray TOM1 spot ID 1-1-6.2.13.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C15433 [cLED-11-O22] Trace: SGN-T51343 EST: SGN-E235333 Direction: 5' Facility: TIGR
Clone: SGN-C175533 [TUS-21-J11] Trace: SGN-T190537 EST: SGN-E377775 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377776Length: 667 bp (949 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377776 [] (trimmed) CCACATGTTGGCAGAGAGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAGGTGCTTCTGTTTT
CTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAA
GAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGG
ACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAA
CAATTCAAGGTGCTCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTT
GCTCGTGGATTTGACCAATCACAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACACGAGAGTCCAACAGAGCCAGATCATGAGGTATA
CCTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAGGGTGCGATATTCAACTTGCTGTGCAGTGACAGAGACAACATGCTAATGTCAAAGA
TT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377776] SGN-U586037 Tomato 200607 Build 2 67 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190538 [Download][View] Facility Assigned ID: FA0AAD9CE06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0020 Quality Trim Threshold: 14.5