EST details — SGN-E377905
Search information |
Request: 377905 | Match: SGN-E377905 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C175108 | Clone name: TUS-20-H18 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175108 is on microarray TOM1 spot ID 1-1-7.4.13.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C23960 [cLED-6-M8] | Trace: SGN-T49961 | EST: SGN-E232975 | Direction: 5' | Facility: TIGR |
Clone: SGN-C175108 [TUS-20-H18] | Trace: SGN-T190126 | EST: SGN-E377904 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E377905 | Length: 692 bp (910 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E377905 [] (trimmed)
GATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTAGTGAACCACGGCATACCAGAAAA
TCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTA
TAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCC
ACCAAACCACAAACCTACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTT
AGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTG
AACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGC
AAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGATATTTAGTAATGGGAAGTACAAGAGCAA
CATGCATAGAGCAGTGGTGAACAACAA
TCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTA
TAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCC
ACCAAACCACAAACCTACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTT
AGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTG
AACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGC
AAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGATATTTAGTAATGGGAAGTACAAGAGCAA
CATGCATAGAGCAGTGGTGAACAACAA
Unigenes |
Current Unigene builds | |||||
[SGN-E377905] | SGN-U579869 | Tomato 200607 | Build 2 | 86 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T190127 [Download][View] | Facility Assigned ID: FA0AAD8DD09RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.976 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |