Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E377919

Search information 
Request: 377919Match: SGN-E377919
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175192Clone name: TUS-20-L6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175192 is on microarray TOM1 spot ID 1-1-3.4.14.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24075 [cLED-7-C16] Trace: SGN-T50350 EST: SGN-E231841 Direction: 5' Facility: TIGR
Clone: SGN-C175192 [TUS-20-L6] Trace: SGN-T190142 EST: SGN-E377920 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377919Length: 707 bp (930 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377919 [] (trimmed) GGAAATCCTAAGAGACATAAATAACAAAAAACAATAACCAAACAAAGGCTATTAAGCTGTATATGACAAATAAATTCCAAATATAAAGTAAAAAA
GGCCTTTGACACACCAAACTTGCCATCCAATGGCAAATAAATGGTAATGAAGTTCACAAGGATCAGTTTTTCATCCCCACCAATTTGTACATCCA
AGTGCAATCAAAAAAACAGTAGCCAACTCGGTTTACAAACCACAGCAAGATGACTTTTGGGCACCTTGACCAGCAGTTCCTGCCTGATCGGATTG
GTTGATCCTGATTGACTGAGGCTCAGTCTTGGAATCAAATTCTGAAAGCCTTTGCTTGATATCCTTACCAATTGAAAAAAAAACTTTTTCGACAT
TCAGGTTTGTCTTTGCACTTGTTTCAAAAAACTTAATGCCATATTCATCAGCAAGAGCTTGACCTTTGGAAGTTGGCACAGCCCTTTTGCTTTCA
TCCATATCAGCCTTGTTCCCGACCAAAATCTTGTTGACATTATCAAAAGCATGCTGCTTTATGTTGCGAATCCAGTTCCTGATGTTATTGAAAGA
AGACTCGTCCGTGACATCATACACCAGCAGAATCCCCATTGCTCCTCGGTAATACGCTGTTGTGATAGTGCGGAAACGCTCTTGACCAGCTGTAT
CCCAAATTTGAAACTTAATCCGCTTGCCATCAAGTTCAATTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377919] SGN-U578346 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190141 [Download][View] Facility Assigned ID: FA0AAD8DF03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0102 Quality Trim Threshold: 14.5