EST details — SGN-E377958

Search information 
Request: 377958Match: SGN-E377958
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175006Clone name: TUS-20-D12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175006 is on microarray TOM1 spot ID 1-1-5.4.13.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23845 [cLED-6-I10] Trace: SGN-T50236 EST: SGN-E233250 Direction: 5' Facility: TIGR
Clone: SGN-C175006 [TUS-20-D12] Trace: SGN-T190179 EST: SGN-E377957 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377958Length: 630 bp (932 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377958 [] (trimmed) TGAAGATCCGAAAAACTTCAGGAAAACCATTGGGAGAATAATGAGCGCCCAACACTCCATACCCGATTATGTACGAGTCACACCAGATTGCAGGA
ACCTCCTTTCGCGAATCTTTGTTGCAAATCCCTCTAAGAGGATAACTATTCCTGAGATAAAGAAACATCCTTGGTTCTTAAAGAATCTACCAAAA
GAGCTGATGGATGTTGAGCACGCGAGATTCGAAGAAGCTTCAGAGCAACTACAACAAAGTGTTGAAGAAATCATGAAGATGATACAAGAAGCTAA
AGTACCTGGAGTAGTGTCAAAATCTGAAGGGAAAGATCCTGCAGGGACAGCAGAACAAGATGATTTAGAGGAAGACCTCGAATCGGAAATCGACA
GCAGCAATGACTTTGCTGTTTATGTCTGAGGATGAAATTTTATGATCAATTTGAACTTATAAGAGAAAAAAATGTTTAATATGTTAACTCTTTGT
ATTGTTAAAATTATGGCTTTGTATAGATGAGTTATGCACAGAGCTGCTATTTACTGAGTTCTAAAGTGTGCATTTCATTTCATGTAATGTTTGCA
ACAAACAGATTATGTAACTTTTTAAGTTTTAACCATTTGGTATCCGTCTAATTCGGATTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377958] SGN-U586078 Tomato 200607 Build 2 48 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190180 [Download][View] Facility Assigned ID: FA0AAD8DB06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.943 Expected Error Rate: 0.0008 Quality Trim Threshold: 12.5