EST details — SGN-E378167
| Search information |
| Request: 378167 | Match: SGN-E378167 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C176409 | Clone name: TUS-23-N23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176409 is on microarray TOM1 spot ID 1-1-2.2.10.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C26681 [cLEF-41-E12] | Trace: SGN-T60263 | EST: SGN-E246848 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C176409 [TUS-23-N23] | Trace: SGN-T181328 | EST: SGN-E368401 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176409 [TUS-23-N23] | Trace: SGN-T181329 | EST: SGN-E368402 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378167 | Length: 948 bp (1309 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378167 [] (trimmed)
NGGGCTTCAGGTTCAATTTCAATAGGTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATAAATTGATTTTTTTAT
TGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAAT
CATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACA
ACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCC
AACAGTGGTCGCGAGCGTAAGAGAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTG
GAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACC
GTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTT
CCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGT
TAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATC
CATCAAAATCGATCGACCTTAACGCCACCACAATTCAACAATCGANGCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACA
TGATTCGTGGAATCTTCCAGAAAGATGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAAT
CATGTTGTTTGGTGTGAGAGTAAAAGTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACA
ACAACAACAACGGCGGCGGTGATAACAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCC
AACAGTGGTCGCGAGCGTAAGAGAGGAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTG
GAGAGGAATCTCTCGTAACTTCGTAAAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACC
GTCGCCGCCGTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTT
CCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGT
TAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATC
CATCAAAATCGATCGACCTTAACGCCACCACAATTCAACAATCGANGCATCGTCGTTGTCACTGAGATTATCATTGTCACTTGATCAGGGACA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378167] | SGN-U578198 | Tomato 200607 | Build 2 | 42 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1404 [Download] [View] | Facility Assigned ID: TUS23N23.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.990 | Expected Error Rate: 0.0060 | Quality Trim Threshold: 14.5 |
Working
