EST details — SGN-E378201
| Search information |
| Request: 378201 | Match: SGN-E378201 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C180927 | Clone name: TUS-35-K5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180927 is on microarray TOM1 spot ID 1-1-4.3.17.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C35818 [cLEG-36-H21] | Trace: SGN-T70915 | EST: SGN-E255632 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C180927 [TUS-35-K5] | Trace: SGN-T187415 | EST: SGN-E375647 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180927 [TUS-35-K5] | Trace: SGN-T187416 | EST: SGN-E375648 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378201 | Length: 935 bp (1126 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378201 [] (trimmed)
TCTGGTGGACAATTTTCAAAAGCTTTGAATCGTTTTCAGAAGGAGGACCCTACATTCCGTGTGGGTTTAGATGCTGAGAGTGGTGAGACAATCAT
ATCTGGCATGGGGGAGCTGCATCTGGACATATATGTTGAGCGCATCCGGAGAGAATATAAGGTTGAAGCTCAGGTTGGAAAGCCTCGTGTAAACT
TCAGGGAAACCATCACTAAGCGAGCAGATTTTGATTATCTACACAAGAAGCAAAGTGGTGGGCAAGGTCAATATGGTAGAGTAATTGGGTATGTT
GAACCTCTTGAACCAGGGTCAGGCAGTAAGTTTGAATTTGAGAACATGCTTGTGGGACAAACTATTCCGTCAAACTATGTCCCTGCAATTGAAAA
GGGTTTCAGGGAGGCTGCCAATTCGGGCTCTCTGATTGGTCATCCTGTTGAAAATATCCGTGTTGTTTTGACGGATGGTGCCTCACATAATGTTG
ATTCAAGTGAACTTGCATTCAAATTAGCTTCTATTTATGCTTTTAGACAGTGTTATACTGCAGCCAAGCCTATAATTTTAGAACCTGTGATGCTG
GTGGATATAAAAGTGCCAACAGAATTTCAGGGCACTGTTACTGGGGATATCAATAAGAGGAAAGGTGTCATAATCGGCAATGACCAGGAAGGAGA
TGACTCTGTAATTACTGCCAATGTTCCTCTCAACATGATGTTTGGGTACTCAACATCTCTTNCGATCATGACACAGGGGAAAGGTGAGTTCACAA
TGGAATACAGAGAGCATGCCCCAGTTTCAGGAGATACACAAACGCAACTTGTTAACGCATACAGGGCCAGCAAAAAAATTGAAAAGATGGTGTGG
CTTTGAAGCTCCCTGCACTACATCCTGTTTAAATTATTTTTTTTATGAATTTGTCTCCTTGGGTGGGAGCAATGTTGTGA
ATCTGGCATGGGGGAGCTGCATCTGGACATATATGTTGAGCGCATCCGGAGAGAATATAAGGTTGAAGCTCAGGTTGGAAAGCCTCGTGTAAACT
TCAGGGAAACCATCACTAAGCGAGCAGATTTTGATTATCTACACAAGAAGCAAAGTGGTGGGCAAGGTCAATATGGTAGAGTAATTGGGTATGTT
GAACCTCTTGAACCAGGGTCAGGCAGTAAGTTTGAATTTGAGAACATGCTTGTGGGACAAACTATTCCGTCAAACTATGTCCCTGCAATTGAAAA
GGGTTTCAGGGAGGCTGCCAATTCGGGCTCTCTGATTGGTCATCCTGTTGAAAATATCCGTGTTGTTTTGACGGATGGTGCCTCACATAATGTTG
ATTCAAGTGAACTTGCATTCAAATTAGCTTCTATTTATGCTTTTAGACAGTGTTATACTGCAGCCAAGCCTATAATTTTAGAACCTGTGATGCTG
GTGGATATAAAAGTGCCAACAGAATTTCAGGGCACTGTTACTGGGGATATCAATAAGAGGAAAGGTGTCATAATCGGCAATGACCAGGAAGGAGA
TGACTCTGTAATTACTGCCAATGTTCCTCTCAACATGATGTTTGGGTACTCAACATCTCTTNCGATCATGACACAGGGGAAAGGTGAGTTCACAA
TGGAATACAGAGAGCATGCCCCAGTTTCAGGAGATACACAAACGCAACTTGTTAACGCATACAGGGCCAGCAAAAAAATTGAAAAGATGGTGTGG
CTTTGAAGCTCCCTGCACTACATCCTGTTTAAATTATTTTTTTTATGAATTTGTCTCCTTGGGTGGGAGCAATGTTGTGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378201] | SGN-U570886 | Tomato 200607 | Build 2 | 34 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1653 [Download] [View] | Facility Assigned ID: TUS35K5.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0095 | Quality Trim Threshold: 14.5 |
Working
