EST details — SGN-E378349
| Search information |
| Request: 378349 | Match: SGN-E378349 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C174156 | Clone name: TUS-18-A2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C174156 is on microarray TOM1 spot ID 1-1-7.1.16.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C7124 [cLEC-37-N9] | Trace: SGN-T31415 | EST: SGN-E208424 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C174156 [TUS-18-A2] | Trace: SGN-T189227 | EST: SGN-E376613 | Direction: 5' | Facility: INRA |
| Clone: SGN-C174156 [TUS-18-A2] | Trace: SGN-T189293 | EST: SGN-E376679 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378349 | Length: 447 bp (1157 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378349 [] (trimmed)
AATTCGGAACCAGGCGGCCACTACGTGTGGCCATAACTCAGTGAATTCGAAAGATCATATCGGCTTTCTCACTACTCCCTCGTTCTTCAGTCCAA
TGGCTGAAATGAGTGTTACCACCGCTTCACTTCAATCCTTTCCTAAATCACTTCTCTGCTCTCTCTCAACTAGAAAATTCAACTCTTCTTTTCAC
CCTTCAGCTATTTTATCTCCCATTTCCAGGTTTTGCTTAATATCTAAATTCAATTCGTTTCGTTTCTCTGCTGCTGTTGTAAAGGCTGCTTCTTC
TCCACACGCAAATACAAAGGAGCCAATGCTTCCTCCTTACGATGTCTTAATTACAGGTGCTTCCAAAGGAATAGGCTATGCATTAGCTAAAGAAT
TTCTCAAGGCAGGTGATAATGTCATCATTTGCTCCAGATCAGATGNAAGAGTTGTATCTGCTCTCGA
TGGCTGAAATGAGTGTTACCACCGCTTCACTTCAATCCTTTCCTAAATCACTTCTCTGCTCTCTCTCAACTAGAAAATTCAACTCTTCTTTTCAC
CCTTCAGCTATTTTATCTCCCATTTCCAGGTTTTGCTTAATATCTAAATTCAATTCGTTTCGTTTCTCTGCTGCTGTTGTAAAGGCTGCTTCTTC
TCCACACGCAAATACAAAGGAGCCAATGCTTCCTCCTTACGATGTCTTAATTACAGGTGCTTCCAAAGGAATAGGCTATGCATTAGCTAAAGAAT
TTCTCAAGGCAGGTGATAATGTCATCATTTGCTCCAGATCAGATGNAAGAGTTGTATCTGCTCTCGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378349] | SGN-U564668 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1307 [Download] [View] | Facility Assigned ID: TUS18A2.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.961 | Expected Error Rate: 0.0075 | Quality Trim Threshold: 14.5 |
Working
