EST details — SGN-E378378
| Search information |
| Request: 378378 | Match: SGN-E378378 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C176603 | Clone name: TUS-24-G1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176603 is on microarray TOM1 spot ID 1-1-8.3.9.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C27095 [cLEF-42-I22] | Trace: SGN-T60587 | EST: SGN-E247543 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C176603 [TUS-24-G1] | Trace: SGN-T192955 | EST: SGN-E391629 | Direction: 5' | Facility: INRA |
| Clone: SGN-C176603 [TUS-24-G1] | Trace: SGN-T193188 | EST: SGN-E391862 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378378 | Length: 824 bp (1303 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378378 [] (trimmed)
AATTCGGAACAAGTTTTTTTTTCCTTGTAAAAATCGATTCTTGAAAGAAAAAAACAAAAAAAAGAGACACCCCTTTTCTTGTTTTTCCCCTTTTC
CCTTTTTGTTGTTTGGTTTGTTTTGGATTGTGGGTGTTTCTCTTCTAGTGTTTGTTGTGGAGAAAGATAACAAAAAGGGGTCTCAAAGAAATGGC
ACAAAATGAGCATCAACAGCAGCAGCAGCAGCAGCAAGGGTTAATAGAGCCTGCTGTTCTTGATGATATTATCAATAGGCTTTTGGAGTTTAGAA
ATGCAAGAACTGTTAGGCAGGTTCAGATTTCTGAGGCTGAGATCCGTTCCCTTTGTAGTGCTTCTAGGGAAATCTTTCTTCAACAACCTAATCTT
CTTGAACTTGAAGCACCCATCAAGATCTGTGGTGACATTCATGGCCAGTATGGTGATCTTTTGAGGCTTTTTGAATATGGGGGATTTCCTCCTGA
GGCTAACTATTTGTTTTTAGGGGACTATGTGGACCGTGGTAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTG
AAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAG
CTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGA
TTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTG
CCTTTTTGTTGTTTGGTTTGTTTTGGATTGTGGGTGTTTCTCTTCTAGTGTTTGTTGTGGAGAAAGATAACAAAAAGGGGTCTCAAAGAAATGGC
ACAAAATGAGCATCAACAGCAGCAGCAGCAGCAGCAAGGGTTAATAGAGCCTGCTGTTCTTGATGATATTATCAATAGGCTTTTGGAGTTTAGAA
ATGCAAGAACTGTTAGGCAGGTTCAGATTTCTGAGGCTGAGATCCGTTCCCTTTGTAGTGCTTCTAGGGAAATCTTTCTTCAACAACCTAATCTT
CTTGAACTTGAAGCACCCATCAAGATCTGTGGTGACATTCATGGCCAGTATGGTGATCTTTTGAGGCTTTTTGAATATGGGGGATTTCCTCCTGA
GGCTAACTATTTGTTTTTAGGGGACTATGTGGACCGTGGTAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTG
AAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAG
CTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGA
TTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378378] | SGN-U578493 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1419 [Download] [View] | Facility Assigned ID: TUS24G1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0078 | Quality Trim Threshold: 14.5 |
Working
