EST details — SGN-E378402
| Search information |
| Request: 378402 | Match: SGN-E378402 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179795 | Clone name: TUS-32-L1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179795 is on microarray TOM1 spot ID 1-1-8.4.1.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C80837 [cLET-13-I22] | Trace: SGN-T105772 | EST: SGN-E293929 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179795 [TUS-32-L1] | Trace: SGN-T186165 | EST: SGN-E373012 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179795 [TUS-32-L1] | Trace: SGN-T186166 | EST: SGN-E373013 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378402 | Length: 998 bp (1175 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378402 [] (trimmed)
CTGCGGGGAGTGAGAACGCCAGAGAAGACGGCGCCGCCGGATACGGCGACGGCGACGGTCAGGTATCGGGAAGAAGATCTAATGTTGAATCTGGA
ATAGTAGAAGATCACCACGCTCTGAACTCGCGAGTGCCTTCGGCTGACTTGATGGTCAATTCTCCTCCGCAGAGTCCACATCGTTCAGCTTCACC
TCTCTTGTTCGGACCTCAGGTGCCAGTAGTTCCTTTACAAGGAGGGGATGGCAATCCTGTTAGCAATCAAATGTGGGGCAATGAATGCGAGGATG
CCTCTGATCATTCACTAGAGGGCGGCATACCTACTTTGATAACATGGAGTTATGGTGGTAATAACGTTGCTATCCAAGGATCTTGGGACAACTGG
ACATCAAGGAAAATTCTCCAAAGATCAGGCAAGGACTATACCGTTCTTTTGGTCCTTCCATCGGGTATATATCATTACAAATTCATTGTGGATGG
GGAAGTTAGATATATTCCAGAACTTCCATGTGTAGCAGATGAGACAGGCGTTGTCTTTAATCTTCTTGATGTTAATGACAATGTTCCAGAGAACC
TCGAAAGTGTTGCAGAGTTTGAGGCCCCACCATCACCTGACTCTAGCTATGCGCAAGCTTTGATGGGAGAGGAGGATTTTGAAAAGGAGCCAGTG
GCAGTTCCACCGCAACTTCATCTAACTGTTCTTGGTTCTGAAAACTCAGAAGAAGCACCTTCTTCTCCAAACCCCAGCACGTAGTACTTAATCAC
CTCTTTATAGAGAAAGGATGGGCTTCTCNATCCGTTGTTGCTCTTGGTTTACGCATAGATTCCAGTCCAATATGTCACAGTTGTTCTCTACAGCC
ACTGAAGAGGTGACACTCCCGTGTTACATCAATCTTTCTAGAGCTTCTCAGTGTGCTGCTTTAGATTCCACTGTTATAGACTGCTCATGTTCAAC
TTCTTTACCTCTCTCTGTGTCAAAGAGCATGCTTTCTCGTTCTCACTC
ATAGTAGAAGATCACCACGCTCTGAACTCGCGAGTGCCTTCGGCTGACTTGATGGTCAATTCTCCTCCGCAGAGTCCACATCGTTCAGCTTCACC
TCTCTTGTTCGGACCTCAGGTGCCAGTAGTTCCTTTACAAGGAGGGGATGGCAATCCTGTTAGCAATCAAATGTGGGGCAATGAATGCGAGGATG
CCTCTGATCATTCACTAGAGGGCGGCATACCTACTTTGATAACATGGAGTTATGGTGGTAATAACGTTGCTATCCAAGGATCTTGGGACAACTGG
ACATCAAGGAAAATTCTCCAAAGATCAGGCAAGGACTATACCGTTCTTTTGGTCCTTCCATCGGGTATATATCATTACAAATTCATTGTGGATGG
GGAAGTTAGATATATTCCAGAACTTCCATGTGTAGCAGATGAGACAGGCGTTGTCTTTAATCTTCTTGATGTTAATGACAATGTTCCAGAGAACC
TCGAAAGTGTTGCAGAGTTTGAGGCCCCACCATCACCTGACTCTAGCTATGCGCAAGCTTTGATGGGAGAGGAGGATTTTGAAAAGGAGCCAGTG
GCAGTTCCACCGCAACTTCATCTAACTGTTCTTGGTTCTGAAAACTCAGAAGAAGCACCTTCTTCTCCAAACCCCAGCACGTAGTACTTAATCAC
CTCTTTATAGAGAAAGGATGGGCTTCTCNATCCGTTGTTGCTCTTGGTTTACGCATAGATTCCAGTCCAATATGTCACAGTTGTTCTCTACAGCC
ACTGAAGAGGTGACACTCCCGTGTTACATCAATCTTTCTAGAGCTTCTCAGTGTGCTGCTTTAGATTCCACTGTTATAGACTGCTCATGTTCAAC
TTCTTTACCTCTCTCTGTGTCAAAGAGCATGCTTTCTCGTTCTCACTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378402] | SGN-U564868 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1557 [Download] [View] | Facility Assigned ID: TUS32L1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.995 | Expected Error Rate: 0.0076 | Quality Trim Threshold: 14.5 |
Working
