EST details — SGN-E378498
| Search information |
| Request: 378498 | Match: SGN-E378498 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C173622 | Clone name: TUS-16-J20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173622 is on microarray TOM1 spot ID 1-1-5.2.18.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C4004 [cLEC-23-E13] | Trace: SGN-T28238 | EST: SGN-E206279 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C173622 [TUS-16-J20] | Trace: SGN-T196946 | EST: SGN-E395620 | Direction: 3' | Facility: INRA |
| Clone: SGN-C173622 [TUS-16-J20] | Trace: SGN-T196947 | EST: SGN-E395621 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378498 | Length: 535 bp (1173 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378498 [] (trimmed)
TTCAGTTAGGGTTACAACTTTGGACTTCTTCTTGTCAAAGGACTTCCGAAAAATGGAAAGGATAATGTGAGCTCCGGTTAATCGCAGTATATTTC
TTCAACAAGATCCGGTCTTCTTCTTCTTCATAGTGAGGCAGTCTTCTTCTTCTGTTTGACAAGTATTTTTCTTCATCTCCATTGGTCTTAGTCTC
CAACAGTAATCTTCTTCTACCGCAATTTTTTATAAAGTTTTTTCTCAGATTGGAGACTCTTTTTCCTTCCAAAGCTCATCAAAACTAGCTCGTGG
TCGTTGAAGCTTGTGGCCAGCTCGTGCTCGTCCCAGTATGGCTGCTCCAAAGAAGGTTTGGGGCTTATTCTAAGTAGAATTTAAAGTTTATTCTC
TTGTCAATTAAATTTGTTGGCCTGGCTACATGTTTCCAGCAGGATTTGAATAGTCATGAGTCAACAAGAGCCTTCGAAAAGATACAAAAGAGCAA
AAAAGAACCTTGCTTTACGTGGATCATTATCATTCTGGGCAAATAAAAAACAACGATTAT
TTCAACAAGATCCGGTCTTCTTCTTCTTCATAGTGAGGCAGTCTTCTTCTTCTGTTTGACAAGTATTTTTCTTCATCTCCATTGGTCTTAGTCTC
CAACAGTAATCTTCTTCTACCGCAATTTTTTATAAAGTTTTTTCTCAGATTGGAGACTCTTTTTCCTTCCAAAGCTCATCAAAACTAGCTCGTGG
TCGTTGAAGCTTGTGGCCAGCTCGTGCTCGTCCCAGTATGGCTGCTCCAAAGAAGGTTTGGGGCTTATTCTAAGTAGAATTTAAAGTTTATTCTC
TTGTCAATTAAATTTGTTGGCCTGGCTACATGTTTCCAGCAGGATTTGAATAGTCATGAGTCAACAAGAGCCTTCGAAAAGATACAAAAGAGCAA
AAAAGAACCTTGCTTTACGTGGATCATTATCATTCTGGGCAAATAAAAAACAACGATTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378498] | SGN-U564002 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1286 [Download] [View] | Facility Assigned ID: TUS16J20.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0103 | Quality Trim Threshold: 14.5 |
Working
