EST details — SGN-E378516
| Search information |
| Request: 378516 | Match: SGN-E378516 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175811 | Clone name: TUS-22-F1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175811 is on microarray TOM1 spot ID 1-1-8.2.11.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C16839 [cLED-17-L8] | Trace: SGN-T53053 | EST: SGN-E238611 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175811 [TUS-22-F1] | Trace: SGN-T180757 | EST: SGN-E368008 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175811 [TUS-22-F1] | Trace: SGN-T180758 | EST: SGN-E368009 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378516 | Length: 507 bp (1275 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378516 [] (trimmed)
TCAGGTGGTGTTGCAGCTCCAGGACATGATGTACGATTACATCCTGATCCACAATCAAAGAATTATGTTTTCTCAAATGCTCTTTCAAGCCCTGT
TCGGCAAAGCCTGCAGAATTATCAAGTTGCTCAAGGAGGTTACTTTTCAAACAATGTTCAGCTATCAATTGGAGCAAGAAACAACGAAACCAACC
TCCACCACCAAAATGGGGATTCCAATAGCTATAACTCAGCTGATGCTGCCATGGATATGCATTCTGATAGCCCTGGTCATGATTTTACTTGCTGA
AGTAATTTGTATATAGAATGTTTTGGGAGCTGCTTCTTGTCATGCCGTGGTATTCAAGCAGCAAGTTCAGGTTGATTGATTGTCGTGTGTAGCAG
CTGTTGTCAGGGAGAAAATGCCGTTATTGAATTGGGTGTATGATTCAGAGATTGAAAGGTGCGTTCGTGTTGCCTAGTAAATCATCATTCTGTTG
ACATGCTCCTTAACGTAAATGCAACGGGATGG
TCGGCAAAGCCTGCAGAATTATCAAGTTGCTCAAGGAGGTTACTTTTCAAACAATGTTCAGCTATCAATTGGAGCAAGAAACAACGAAACCAACC
TCCACCACCAAAATGGGGATTCCAATAGCTATAACTCAGCTGATGCTGCCATGGATATGCATTCTGATAGCCCTGGTCATGATTTTACTTGCTGA
AGTAATTTGTATATAGAATGTTTTGGGAGCTGCTTCTTGTCATGCCGTGGTATTCAAGCAGCAAGTTCAGGTTGATTGATTGTCGTGTGTAGCAG
CTGTTGTCAGGGAGAAAATGCCGTTATTGAATTGGGTGTATGATTCAGAGATTGAAAGGTGCGTTCGTGTTGCCTAGTAAATCATCATTCTGTTG
ACATGCTCCTTAACGTAAATGCAACGGGATGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378516] | SGN-U570653 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1378 [Download] [View] | Facility Assigned ID: TUS22F1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0089 | Quality Trim Threshold: 14.5 |
Working
