EST details — SGN-E378535
| Search information |
| Request: 378535 | Match: SGN-E378535 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C177672 | Clone name: TUS-27-C14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177672 is on microarray TOM1 spot ID 1-1-3.3.6.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C47489 [cLEI-16-G23] | Trace: SGN-T83341 | EST: SGN-E269117 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C177672 [TUS-27-C14] | Trace: SGN-T182923 | EST: SGN-E370548 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177672 [TUS-27-C14] | Trace: SGN-T182924 | EST: SGN-E370549 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378535 | Length: 673 bp (1105 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378535 [] (trimmed)
CTGGTGCGAACAACCTCACCTCCGCCGTCCCTGTCTCTCGGAAATCACGTGCAAAATCCGGCGTTCACTCTTCGTTACCGTCCTCCGACCTCTGG
ACTATCGCGAAATGCCCACTTGAAGATATTGCCCTTTCTGATTGCAAGTCGTATTCGTGTCCCCCTTTTTACTATGCTTATGGTGGGGGGGGGGG
GGGGGGGAAACTTTACAGCGATGAATTATCAATACCCATGTCGTCTCCATCGTTGATTTTGAAGAATTTTACATTTGGGTGTGCTCACAGTGCTC
TCGGTGAACCCATCGGAGTAGCTGGATTTGGCCGGGGGACACTTTCATTGCCGGCGCAACTCGCGAATAACTCCCCGGAAATCGGAAATTACTTC
TCTTATTGGTTAGTTTCTCACACTTTTGACACGAATCAAGTTCATCGACCCAGTCCGCTCATTCTCGGCCGATACTCTATCTATGAAAAAATGAA
ACAGATGAAGAATTATTACTCCGATTACGCTTACACCCCAATGCTCAATAACCCGGGGGGGGGGGGGGGGGTACACCCTCCGACTCGAAGGTGTA
TCAATCGGAAAAACAAAAATCCCGGCGCCGGGGAGTTTACGGCGAGTTGACAAAAGAGGAAACGGCGGAATGGTGGTGGATTCCGGTACAACTTT
CACTATGG
ACTATCGCGAAATGCCCACTTGAAGATATTGCCCTTTCTGATTGCAAGTCGTATTCGTGTCCCCCTTTTTACTATGCTTATGGTGGGGGGGGGGG
GGGGGGGAAACTTTACAGCGATGAATTATCAATACCCATGTCGTCTCCATCGTTGATTTTGAAGAATTTTACATTTGGGTGTGCTCACAGTGCTC
TCGGTGAACCCATCGGAGTAGCTGGATTTGGCCGGGGGACACTTTCATTGCCGGCGCAACTCGCGAATAACTCCCCGGAAATCGGAAATTACTTC
TCTTATTGGTTAGTTTCTCACACTTTTGACACGAATCAAGTTCATCGACCCAGTCCGCTCATTCTCGGCCGATACTCTATCTATGAAAAAATGAA
ACAGATGAAGAATTATTACTCCGATTACGCTTACACCCCAATGCTCAATAACCCGGGGGGGGGGGGGGGGGTACACCCTCCGACTCGAAGGTGTA
TCAATCGGAAAAACAAAAATCCCGGCGCCGGGGAGTTTACGGCGAGTTGACAAAAGAGGAAACGGCGGAATGGTGGTGGATTCCGGTACAACTTT
CACTATGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378535] | SGN-U588252 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1457 [Download] [View] | Facility Assigned ID: TUS27C14.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0129 | Quality Trim Threshold: 20.5 |
Working
