EST details — SGN-E378538
| Search information |
| Request: 378538 | Match: SGN-E378538 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C177841 | Clone name: TUS-27-J15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177841 is on microarray TOM1 spot ID 1-1-2.2.6.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C64111 [cLEM-5-C21] | Trace: SGN-T85147 | EST: SGN-E271342 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C177841 [TUS-27-J15] | Trace: SGN-T183163 | EST: SGN-E370926 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177841 [TUS-27-J15] | Trace: SGN-T183164 | EST: SGN-E370927 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378538 | Length: 989 bp (1309 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378538 [] (trimmed)
GATCCCCCGGGCCCTAGGAATTCGGCACGAGGGTCGACTCTGGAAAGTCTACTACTCCTGGTCACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTTATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAACTTAAGGCTGAACGTGA
GCGTGGTATCACTATTGATATTGCTTTGTGGAAGTTTGAGACCACTAAGTACTACTGCACTGTGATTGATGCCCCCGGACACAGGGACTTTATCA
AGAACATGATCACTGGTACCTCCCAGGCTGACTGTGCTGTCCTCATTATTGACTCCACCACTGGTGGTTTCGAAGCTGGTATCTCAAAGGATGGT
CAGACCCGTGAACATGCATTGCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAACAAGATGGATGCTACCACCCCAAAGTACTC
AAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGTTACAACCCTGACAAAATCCCATTTGTTCCCATCTCTG
GTTTTGAAGGAGATAATATGATTGAGAGGTCTACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTCGACCAGATTAATGAGCCC
AAGAGGCCATCAGACAAACCACTCCGTCTCCCACTTCAGGATGTTTACAAGATTGGTGGTATTGGAACTGTCCCAGTTGGTCGTGTAGAGACTGG
CGTAATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTACTGGTTTGACAACTGAAGTCAAGTCTGTTGAGATGCACACGAAGCTCTCCAGGAGGC
GCTCCCTGGAAGACATGTTGGGTTCAATGTTAAGAATGTTGCTGTTAAGGATCTTAAGCGTGGTTTATGTTGCTCAAACTCAAGGATGACCCAGC
TAAGGGGGCAGCCAGTTTCACTGCCCAGGTCATCATCAT
CGTGTTATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAACTTAAGGCTGAACGTGA
GCGTGGTATCACTATTGATATTGCTTTGTGGAAGTTTGAGACCACTAAGTACTACTGCACTGTGATTGATGCCCCCGGACACAGGGACTTTATCA
AGAACATGATCACTGGTACCTCCCAGGCTGACTGTGCTGTCCTCATTATTGACTCCACCACTGGTGGTTTCGAAGCTGGTATCTCAAAGGATGGT
CAGACCCGTGAACATGCATTGCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAACAAGATGGATGCTACCACCCCAAAGTACTC
AAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGTTACAACCCTGACAAAATCCCATTTGTTCCCATCTCTG
GTTTTGAAGGAGATAATATGATTGAGAGGTCTACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTCGACCAGATTAATGAGCCC
AAGAGGCCATCAGACAAACCACTCCGTCTCCCACTTCAGGATGTTTACAAGATTGGTGGTATTGGAACTGTCCCAGTTGGTCGTGTAGAGACTGG
CGTAATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTACTGGTTTGACAACTGAAGTCAAGTCTGTTGAGATGCACACGAAGCTCTCCAGGAGGC
GCTCCCTGGAAGACATGTTGGGTTCAATGTTAAGAATGTTGCTGTTAAGGATCTTAAGCGTGGTTTATGTTGCTCAAACTCAAGGATGACCCAGC
TAAGGGGGCAGCCAGTTTCACTGCCCAGGTCATCATCAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378538] | SGN-U578520 | Tomato 200607 | Build 2 | 144 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1470 [Download] [View] | Facility Assigned ID: TUS27J15.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 14.5 |
Working
