EST details — SGN-E378587
| Search information |
| Request: 378587 | Match: SGN-E378587 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C181069 | Clone name: TUS-36-A3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181069 is on microarray TOM1 spot ID 1-1-6.1.15.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C17601 [cLED-1-H10] | Trace: SGN-T48630 | EST: SGN-E227118 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C17601 [cLED-1-H10] | Trace: SGN-T48631 | EST: SGN-E227119 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C181069 [TUS-36-A3] | Trace: SGN-T187608 | EST: SGN-E375050 | Direction: 3' | Facility: INRA |
| Clone: SGN-C181069 [TUS-36-A3] | Trace: SGN-T187609 | EST: SGN-E375051 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378587 | Length: 446 bp (1156 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378587 [] (trimmed)
CAGATTCAACGAATTCTCTGGGAGCATTCCTCCAAGTATATGTCAGCTTCAATCTATTCAGATACTGGACCTTTCTGGCAATCGTTTATCAGGAA
GAATTCCGAAATGCCTCAGCAATTTCACCACAATGCAACTTTTGCAAGATGGTTCAAGTGTGAGCTATGACTTCGATCCATACACCCCTCGAGTA
GGTACACTGTACCATGGCAATGCATTAGTCCAATGGAAAAACAAGGAGTCAGAGTATCGTAACATCTTGTGGCTTCTGAAAACCATCGATCTGTC
TAGCAACGAACTAGTCGGTGACATCCCAAATGATTTTAGCAGAATGAATGCATTGCTGTCATTGAACCTATCAAGGAACAATTTGTCGGGAAGTA
TCATTGAAGGAATTGGTTTAATGAAGAATGTGGAGTCTCTTGACTTGTCGAGGAACCATCTCTCGG
GAATTCCGAAATGCCTCAGCAATTTCACCACAATGCAACTTTTGCAAGATGGTTCAAGTGTGAGCTATGACTTCGATCCATACACCCCTCGAGTA
GGTACACTGTACCATGGCAATGCATTAGTCCAATGGAAAAACAAGGAGTCAGAGTATCGTAACATCTTGTGGCTTCTGAAAACCATCGATCTGTC
TAGCAACGAACTAGTCGGTGACATCCCAAATGATTTTAGCAGAATGAATGCATTGCTGTCATTGAACCTATCAAGGAACAATTTGTCGGGAAGTA
TCATTGAAGGAATTGGTTTAATGAAGAATGTGGAGTCTCTTGACTTGTCGAGGAACCATCTCTCGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378587] | SGN-U562726 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1667 [Download] [View] | Facility Assigned ID: TUS36A3.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0028 | Quality Trim Threshold: 14.5 |
Working
