EST details — SGN-E378619
| Search information |
| Request: 378619 | Match: SGN-E378619 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183780 | Clone name: TUS-43-B2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183780 is on microarray TOM1 spot ID 1-1-7.2.19.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C6580 [cLEC-35-N3] | Trace: SGN-T30878 | EST: SGN-E210530 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183780 [TUS-43-B2] | Trace: SGN-T198083 | EST: SGN-E396757 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183780 [TUS-43-B2] | Trace: SGN-T199919 | EST: SGN-E398593 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378619 | Length: 430 bp (1086 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378619 [] (trimmed)
CCTCTCCCTCCATCTTCCGTACCCACCGTCAACTCTACCGCCAGCACCACCACTGCTACAAATACTACGACGACCACCACTGCTTCTACTACCAC
TATCTCCATTTCGGAACTTGAAAAGCTTAAGGTTCTCGGTCATGGAAACGGTGGAACTGTGTATAAAGTCCGTCATAAGCGGACCTCCGCGATCT
ACGCTCTGAAAGTTGTTCACGGTGATAGTGACCCAGAGATTCGCCGTCAGATCCTCCGGGAAATCTCAATTCTTCGCCGGACGGAATCTCCTTAC
GTTATCAAGTGTCATGGAGTTATTGATATGCCCGGGCGGGGATATCGGTATTCTTATGGAGTATATGAACGCCGGTACATTAAAAAATCTACTTA
AATCACATTTACTTTTCTCCGAACTCTGTTTAGCGAGAATCGCTAAGCAA
TATCTCCATTTCGGAACTTGAAAAGCTTAAGGTTCTCGGTCATGGAAACGGTGGAACTGTGTATAAAGTCCGTCATAAGCGGACCTCCGCGATCT
ACGCTCTGAAAGTTGTTCACGGTGATAGTGACCCAGAGATTCGCCGTCAGATCCTCCGGGAAATCTCAATTCTTCGCCGGACGGAATCTCCTTAC
GTTATCAAGTGTCATGGAGTTATTGATATGCCCGGGCGGGGATATCGGTATTCTTATGGAGTATATGAACGCCGGTACATTAAAAAATCTACTTA
AATCACATTTACTTTTCTCCGAACTCTGTTTAGCGAGAATCGCTAAGCAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378619] | SGN-U564043 | Tomato 200607 | Build 2 | 41 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1777 [Download] [View] | Facility Assigned ID: TUS43B2.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0061 | Quality Trim Threshold: 14.5 |
Working
