EST details — SGN-E378751
| Search information |
| Request: 378751 | Match: SGN-E378751 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175088 | Clone name: TUS-20-G22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175088 is on microarray TOM1 spot ID 1-1-3.3.13.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23939 [cLED-6-M10] | Trace: SGN-T50241 | EST: SGN-E233255 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175088 [TUS-20-G22] | Trace: SGN-T189914 | EST: SGN-E377703 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175088 [TUS-20-G22] | Trace: SGN-T189915 | EST: SGN-E377704 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378751 | Length: 760 bp (1151 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378751 [] (trimmed)
GAATTCGGCACCAGGGGGAAACACAAAGAACTTTTATCTATATCAAGGATGCTATTGAAGCTGTTCTCTTGATGATTGAAAATCCTGCAAGGGCC
AATGGTCATATTTTTAATGTGGGCAATCCTAACAATGAAGTTACTGTGCGACAGCTAGCTGAAATGATGACCAAGGTCTATTCGAAGGTGAGTGG
AGAATCTTCTCTTGAAACGCCTACCATTGATATAAGTTCGAAAGAATTTTATGGAGAAGGGTATGATGACAGTGACAAGAGAATTCCGGATATGA
CTATAATCAACAAACAGCTTGCTTGGAACCCGAAAACCTCCCTATGGGACTTGCTTGAATCAACACTCACCTACCAACACAGGACATATGCTGAG
GCTATCAAGCAGGCCATGTCAAAGTCAACTGCAAATTGAGGGAAGGTGGAGCAGTTGCTCATATACGTTTAACTTCTTTTTGCCACTCACACTTT
GAAAATCTATAATAGCTGATGGTTGTAAGCATCATGTATCCTATTTTGTAAGTCGTGACATCAGTCATTAGGGAATTGTGTCATAGGTTGATGTA
ATTTTGTTACTAGAGAGACTTGCCAACAACAGTTATCAGGCACTAAAATGAAGGAGAGCCTGTAGTAATGTCCTTTTAGTATTTTGTTGTTCATT
CTTTTGATTCTTCTGTATGAGAAAGCATCTTGTATAATTTTTTAGACCTGCTGTCTCCGGTAGTCATTTGTTCATCTGTATCAGATTGTCCTTTT
AATGGTCATATTTTTAATGTGGGCAATCCTAACAATGAAGTTACTGTGCGACAGCTAGCTGAAATGATGACCAAGGTCTATTCGAAGGTGAGTGG
AGAATCTTCTCTTGAAACGCCTACCATTGATATAAGTTCGAAAGAATTTTATGGAGAAGGGTATGATGACAGTGACAAGAGAATTCCGGATATGA
CTATAATCAACAAACAGCTTGCTTGGAACCCGAAAACCTCCCTATGGGACTTGCTTGAATCAACACTCACCTACCAACACAGGACATATGCTGAG
GCTATCAAGCAGGCCATGTCAAAGTCAACTGCAAATTGAGGGAAGGTGGAGCAGTTGCTCATATACGTTTAACTTCTTTTTGCCACTCACACTTT
GAAAATCTATAATAGCTGATGGTTGTAAGCATCATGTATCCTATTTTGTAAGTCGTGACATCAGTCATTAGGGAATTGTGTCATAGGTTGATGTA
ATTTTGTTACTAGAGAGACTTGCCAACAACAGTTATCAGGCACTAAAATGAAGGAGAGCCTGTAGTAATGTCCTTTTAGTATTTTGTTGTTCATT
CTTTTGATTCTTCTGTATGAGAAAGCATCTTGTATAATTTTTTAGACCTGCTGTCTCCGGTAGTCATTTGTTCATCTGTATCAGATTGTCCTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378751] | SGN-U579079 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1343 [Download] [View] | Facility Assigned ID: TUS20G22.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
