EST details — SGN-E379114
| Search information |
| Request: 379114 | Match: SGN-E379114 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167916 | Clone name: TUS-1-M2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14709 [cLEC-8-C22] | Trace: SGN-T25162 | EST: SGN-E200073 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C167916 [TUS-1-M2] | Trace: SGN-T48 | EST: SGN-E379475 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379114 | Length: 708 bp (781 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379114 [] (trimmed)
TAGTACATCATATAGGGACATAGGGTATTTACTGTGTTATGTTTTACCAATTGGAATTTATACGCAGTAAAACTTCCTTAAGTACCATATACTTA
CTATATAGAACATATAAAGGTAATTTAATTATCTTTATAATTGGATTATTTCTCGTTTTGTGCGTGTCGGGGTCATGCTAAAGGACATTTATCTC
GGCGATTTTAGTGATTCAACTTGAGATTTTCCTCTAGGTCCGTTTGTTCTAATGAAAGCTCGATACTCGTTGAACGTCGTCGGTAAATATAACGC
CGGCTGATCCTCCGTCACAAGTTCTTCAGCAGGTTGAATAAGGATGTCACCTCCTGGATTGTAGAAAAATGCTAAAGAGACACGTTCTTGCCCTG
AATTAACGATCACGCGATGCTCTATGCTTTTGTATATTGCATTGCTTAGTACCTAATACATGCAATAATTGCAAAAAAAAATAAAAATTCACTAT
CAATATACAAGTTATCGTTATTATTGACGAATTACCTAAGACGTTATGAATACTGACCTGAATTTGATCTCCAATATTAACGATAAAGGCATTAG
GAATCGGTTTAACCGTTATCCAGTCATCACCACGACGGACTTGGAGGCCGGGGACGTCGGTGTCGGGGAGGAGAAGGGTCATGCCACCAGGATCA
GAGTGGGAAGAGAGTCCCAGTGTTAGGTCAGGTTGGGGACATC
CTATATAGAACATATAAAGGTAATTTAATTATCTTTATAATTGGATTATTTCTCGTTTTGTGCGTGTCGGGGTCATGCTAAAGGACATTTATCTC
GGCGATTTTAGTGATTCAACTTGAGATTTTCCTCTAGGTCCGTTTGTTCTAATGAAAGCTCGATACTCGTTGAACGTCGTCGGTAAATATAACGC
CGGCTGATCCTCCGTCACAAGTTCTTCAGCAGGTTGAATAAGGATGTCACCTCCTGGATTGTAGAAAAATGCTAAAGAGACACGTTCTTGCCCTG
AATTAACGATCACGCGATGCTCTATGCTTTTGTATATTGCATTGCTTAGTACCTAATACATGCAATAATTGCAAAAAAAAATAAAAATTCACTAT
CAATATACAAGTTATCGTTATTATTGACGAATTACCTAAGACGTTATGAATACTGACCTGAATTTGATCTCCAATATTAACGATAAAGGCATTAG
GAATCGGTTTAACCGTTATCCAGTCATCACCACGACGGACTTGGAGGCCGGGGACGTCGGTGTCGGGGAGGAGAAGGGTCATGCCACCAGGATCA
GAGTGGGAAGAGAGTCCCAGTGTTAGGTCAGGTTGGGGACATC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379114] | SGN-U564995 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T522 [Download] [View] | Facility Assigned ID: 231_E02_TUS01M2.Td_007.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0043 | Quality Trim Threshold: 20.5 |
Working
