EST details — SGN-E379290
| Search information |
| Request: 379290 | Match: SGN-E379290 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168418 | Clone name: TUS-3-A24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C168418 [TUS-3-A24] | Trace: SGN-T331 | EST: SGN-E379707 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379290 | Length: 790 bp (810 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379290 [] (trimmed)
GATAATCTTCATAATAGTTCTGTTTCTCAGTTGCCAAGATCATAAAATCATCTACATCTAAAAAATTTAAGGGGAAGTACAGTTTAATCTACAAT
GTATTTTTATGTTCAAGAAAGAATGAACACTATTTTTCCATCCACTATGTGTACAATTTTCCCACCTTCCACCCCAAGAATTCTAGACAAAAAAA
TCAAACATCAGCACATCTTGTTGGTGCATATCCCAGTCTGGACCTCTTGGTGTCATATAAGATATGAAAATTCTGCTGTTGATAGTTTCCAATTA
TCGACAAAGCAGACCGAGGAGTCCCAAGAATTGCCAAACAAATGATATCGGGTTCAAGTTTGATGAAGTAGTTCTCTACTGGAAAATTCCATACA
GCTCCATCACCAAACACAATTCCAAACGAGGGAAATTCAACGTTCTTCACTCCGGACACATTGTAACATGGATTCAAAATAGGGAAGTGTTGTAC
AATGGGATAGCTCTTGACCTTCTTGACAAATGCCTCTTTTACAATCTCATAGGCTGGTTCAGCAAAGTAACTCAATGTGGTTCCTGAATCAATGA
TTGTACCACCAACACCTTCTGGAGACAAATTCCACGTCTCCTTCGGTATATTCAGTACCTCTCCTCCAACTATGACAGATTTTATCTGCACATAG
TAGAAAGTCTCTGCAGGGTTATCTTTGCCACCAACCAATGAAAGTAAGTTCAATTGTGGATGCTTCAAAAGATCCTTATCTTCACCAAAAATCAT
TTGCTGCTTACACTAGAATTGCTATTCCTA
GTATTTTTATGTTCAAGAAAGAATGAACACTATTTTTCCATCCACTATGTGTACAATTTTCCCACCTTCCACCCCAAGAATTCTAGACAAAAAAA
TCAAACATCAGCACATCTTGTTGGTGCATATCCCAGTCTGGACCTCTTGGTGTCATATAAGATATGAAAATTCTGCTGTTGATAGTTTCCAATTA
TCGACAAAGCAGACCGAGGAGTCCCAAGAATTGCCAAACAAATGATATCGGGTTCAAGTTTGATGAAGTAGTTCTCTACTGGAAAATTCCATACA
GCTCCATCACCAAACACAATTCCAAACGAGGGAAATTCAACGTTCTTCACTCCGGACACATTGTAACATGGATTCAAAATAGGGAAGTGTTGTAC
AATGGGATAGCTCTTGACCTTCTTGACAAATGCCTCTTTTACAATCTCATAGGCTGGTTCAGCAAAGTAACTCAATGTGGTTCCTGAATCAATGA
TTGTACCACCAACACCTTCTGGAGACAAATTCCACGTCTCCTTCGGTATATTCAGTACCTCTCCTCCAACTATGACAGATTTTATCTGCACATAG
TAGAAAGTCTCTGCAGGGTTATCTTTGCCACCAACCAATGAAAGTAAGTTCAATTGTGGATGCTTCAAAAGATCCTTATCTTCACCAAAAATCAT
TTGCTGCTTACACTAGAATTGCTATTCCTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379290] | SGN-U593045 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T875 [Download] [View] | Facility Assigned ID: 239_A12_TUS03A24.Td_086.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.959 | Expected Error Rate: 0.0066 | Quality Trim Threshold: 20.5 |
Working
