EST details — SGN-E379475
| Search information |
| Request: 379475 | Match: SGN-E379475 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167916 | Clone name: TUS-1-M2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14709 [cLEC-8-C22] | Trace: SGN-T25162 | EST: SGN-E200073 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C167916 [TUS-1-M2] | Trace: SGN-T522 | EST: SGN-E379114 | Direction: 3' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379475 | Length: 707 bp (811 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E379475 [] (trimmed)
TTTTAAACTATGATATATAAATTATTATTAAAAACAAAAAAAAAAATTTTTTTTAAGCTGATTAAAAAGAAAAAGGTGTTAAATAAATTGAATAA
ATGGAATACCTCTTGAAATAAGTTGATTTTGATAGTTTCGCCTCAAAGAGGCCTAGTGGATGATGCACTAGTTGATAATTAACGGTGTAAAAAAG
TATATTTACATAATTAAATCAGTAAATTTCTTAATAAATAAATATCGATGGATCGGGTCCTATGTGGGGGTGTTTGGGACCATGGTCCTGACCAC
CTTGGCTGGTTGGTAAATGCAAGTTGCTGTCTTAGTACTAGTATGCTTATTTAAAAAGTACATAATCCTTCTGAAAAAACATGTCAAACGTGAAA
ATAATTTAATATTTGTACATTTTTTCCATCTAACTGACTTTTGTCTTTTTCTTTCTTTTTGTAATTTGTAAGGAAAATAATTGGTGAATATGGAC
AAGAAGTAGTAAAATTAGGTCGAAAAATAACAAATATCTTGTCGATTAACCTTGGATTAAATGAAAATTATCTACACACAAAATTTGGTGGAGAC
AATGAAAGAGGTGCATGTTTAAGGGTTAACTTTTACCCTAGATGTCCCCAACCTGACCTAACACTTGGACTCTCTTCCCACTCTGATCCTGGTGG
CATGACCCTTCTCCTCCCCGACACCGACGTCCCCGGCCTCCA
ATGGAATACCTCTTGAAATAAGTTGATTTTGATAGTTTCGCCTCAAAGAGGCCTAGTGGATGATGCACTAGTTGATAATTAACGGTGTAAAAAAG
TATATTTACATAATTAAATCAGTAAATTTCTTAATAAATAAATATCGATGGATCGGGTCCTATGTGGGGGTGTTTGGGACCATGGTCCTGACCAC
CTTGGCTGGTTGGTAAATGCAAGTTGCTGTCTTAGTACTAGTATGCTTATTTAAAAAGTACATAATCCTTCTGAAAAAACATGTCAAACGTGAAA
ATAATTTAATATTTGTACATTTTTTCCATCTAACTGACTTTTGTCTTTTTCTTTCTTTTTGTAATTTGTAAGGAAAATAATTGGTGAATATGGAC
AAGAAGTAGTAAAATTAGGTCGAAAAATAACAAATATCTTGTCGATTAACCTTGGATTAAATGAAAATTATCTACACACAAAATTTGGTGGAGAC
AATGAAAGAGGTGCATGTTTAAGGGTTAACTTTTACCCTAGATGTCCCCAACCTGACCTAACACTTGGACTCTCTTCCCACTCTGATCCTGGTGG
CATGACCCTTCTCCTCCCCGACACCGACGTCCCCGGCCTCCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379475] | SGN-U564993 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T48 [Download] [View] | Facility Assigned ID: 222_E02_TUS01M2.T3_088.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.940 | Expected Error Rate: 0.0068 | Quality Trim Threshold: 14.5 |
Working
