EST details — SGN-E379588
| Search information |
| Request: 379588 | Match: SGN-E379588 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C168731 | Clone name: TUS-3-O1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C6217 [cLEC-34-L5] | Trace: SGN-T30397 | EST: SGN-E207953 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C168731 [TUS-3-O1] | Trace: SGN-T627 | EST: SGN-E379537 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379588 | Length: 761 bp (777 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379588 [] (trimmed)
TTCGTTTATATTTTATTAAGATCTCAGGATTACAAGATTAAAGGGACCCATCCTCTCTAGAGAAAAATACAACCACGTTCTGTTGTGTGGAATTT
TCTAAATGTTACAATGGAGCCTTACACTTACAGGATGCTAATAAACAGTCTCCTTTCTTGTATCTTGTTCAGTTGAAGCAACACATGATAGCCCA
TTTTATACAGTGTACAACATCTAATAGGAAACAAAATTTCTAATACTACGACATACAATATTATTTAACTTCTGCAAGTAAATCGTGTCAAAAGT
AGAAACAAATTATCACATGATAATTTGGTTAGAATCCGGCTCTCAGCTGCATCCAGACAGATTTCAATTTCAACACAGGCCCGGCCGGACCTTAC
TAGAAGATCCAATAATAAAGTGAGTTCTTCACAAGGTACGACCAGAACTGGTTGGTAAAATTCACAATATAGAAGCTTACATTTTGTAGCTAGGC
ATATACTTCGTGACATTCTGTATGGTAGGAGGAAGGAGGAAAGAAAGAAGAGCTCTATTTTCCTATCATCTTGGACATCAAATCTAACACTAGGC
AGAGAGATGATTTCCCTCTTTTACCGACACAAGAAATAACTAGAGTGACACATCCTGCAGCAGTAAAAGAAACAAAGGACACATTGTCCTTACCA
CTTTCGNACAAAGAGAGTTTTCTAGTGTCGTCAAAATTCATCAAGGGCTCAAAAGCTTGAAAAACACACTACGAATTCCCCCTCTTAAATGTGGA
T
TCTAAATGTTACAATGGAGCCTTACACTTACAGGATGCTAATAAACAGTCTCCTTTCTTGTATCTTGTTCAGTTGAAGCAACACATGATAGCCCA
TTTTATACAGTGTACAACATCTAATAGGAAACAAAATTTCTAATACTACGACATACAATATTATTTAACTTCTGCAAGTAAATCGTGTCAAAAGT
AGAAACAAATTATCACATGATAATTTGGTTAGAATCCGGCTCTCAGCTGCATCCAGACAGATTTCAATTTCAACACAGGCCCGGCCGGACCTTAC
TAGAAGATCCAATAATAAAGTGAGTTCTTCACAAGGTACGACCAGAACTGGTTGGTAAAATTCACAATATAGAAGCTTACATTTTGTAGCTAGGC
ATATACTTCGTGACATTCTGTATGGTAGGAGGAAGGAGGAAAGAAAGAAGAGCTCTATTTTCCTATCATCTTGGACATCAAATCTAACACTAGGC
AGAGAGATGATTTCCCTCTTTTACCGACACAAGAAATAACTAGAGTGACACATCCTGCAGCAGTAAAAGAAACAAAGGACACATTGTCCTTACCA
CTTTCGNACAAAGAGAGTTTTCTAGTGTCGTCAAAATTCATCAAGGGCTCAAAAGCTTGAAAAACACACTACGAATTCCCCCTCTTAAATGTGGA
T
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379588] | SGN-U585541 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1013 [Download] [View] | Facility Assigned ID: 240_G01_TUS03O1.Td_005.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0117 | Quality Trim Threshold: 20.5 |
Working
