EST details — SGN-E380000
| Search information |
| Request: 380000 | Match: SGN-E380000 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167678 | Clone name: TUS-1-C4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C167678 [TUS-1-C4] | Trace: SGN-T1127 | EST: SGN-E379979 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E380000 | Length: 722 bp (788 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E380000 [] (trimmed)
TGCATAAGTAGCTCAAATCGGAAACTTGGATTAATCTCCAAGACTCTTTCTCAACAAAAAGCAGAACATAATACTTCAAAAACTAGGATGTAATG
TAACAAAAGTTCAAATTTTTACTCACTCCAGTACTTCTCTTCACCATCTTTATGATCTTTTTGATCTTCAAATCCTTTATCCAAACTCATCTTAA
ACTTGTTCACATCCTCCACAGCTGCATTTCTAAACAACGCGATATCTACTGCTCCTGAAACCATATGGTACCCTCTTGATTTCAAATTCTCAGGA
CTATCATGAGGCATTGCAAATCCAGATAAATACGCCCCACCGTCAAGTGGCTTCTTCTTCAATGCTCCTTTTTCAGCTGTATTCATCATCTCCTT
CACTTTCTTATTCCCAGGATCCCATAAGTACCCTAAACTCGCACTCAAATCCAATGGTCCCATTTGAATACAATCAACCCCTTCCACTGCTGCAA
TTTCATCAATCTTCTTCACTCCATCTACACACTCAACTTGACACATGATCAGTAGATCATCCTCGTAATTACTCAAATACCCTTCATCAATTCCA
TAGCTCGAAGCTCTAACAACAGTATGAGCAGATCCACGTACGCCATTAGGCGGGAAACGGCAGTAAGACACTGCCTTTCGGGCTGATTTCGGACC
GTCGATCATCGGAAACATAATGCCCTGTGGGCCCGAGATCGAGGGGTTTTTTTACCC
TAACAAAAGTTCAAATTTTTACTCACTCCAGTACTTCTCTTCACCATCTTTATGATCTTTTTGATCTTCAAATCCTTTATCCAAACTCATCTTAA
ACTTGTTCACATCCTCCACAGCTGCATTTCTAAACAACGCGATATCTACTGCTCCTGAAACCATATGGTACCCTCTTGATTTCAAATTCTCAGGA
CTATCATGAGGCATTGCAAATCCAGATAAATACGCCCCACCGTCAAGTGGCTTCTTCTTCAATGCTCCTTTTTCAGCTGTATTCATCATCTCCTT
CACTTTCTTATTCCCAGGATCCCATAAGTACCCTAAACTCGCACTCAAATCCAATGGTCCCATTTGAATACAATCAACCCCTTCCACTGCTGCAA
TTTCATCAATCTTCTTCACTCCATCTACACACTCAACTTGACACATGATCAGTAGATCATCCTCGTAATTACTCAAATACCCTTCATCAATTCCA
TAGCTCGAAGCTCTAACAACAGTATGAGCAGATCCACGTACGCCATTAGGCGGGAAACGGCAGTAAGACACTGCCTTTCGGGCTGATTTCGGACC
GTCGATCATCGGAAACATAATGCCCTGTGGGCCCGAGATCGAGGGGTTTTTTTACCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E380000] | SGN-U582679 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T185 [Download] [View] | Facility Assigned ID: 227_C04_TUS01C4.Td_024.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.940 | Expected Error Rate: 0.0044 | Quality Trim Threshold: 20.5 |
Working
