EST details — SGN-E390086

Search information 
Request: 390086Match: SGN-E390086
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173819Clone name: TUS-17-C1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173819 is on microarray TOM1 spot ID 1-1-8.3.18.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5600 [cLEC-32-G3] Trace: SGN-T29783 EST: SGN-E207570 Direction: 5' Facility: TIGR
Clone: SGN-C173819 [TUS-17-C1] Trace: SGN-T191411 EST: SGN-E390085 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390086Length: 706 bp (873 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390086 [] (trimmed) CCTCTCCCTCCATCTTCCGTACCCACCGTCAACTCTACCGCCAGCACCACCACTGCTACAAATACTACGACGACCACCACTGCTTCTACTACCAC
TATCTCCATTTCGGAACTTGAAAAGCTTAAGGTTCTCGGTCATGGAAACGGTGGAACTGTGTATAAAGTCCGTCATAAGCGGACCTCCGCGATCT
ACGCTCTGAAAGTTGTTCACGGTGATAGTGACCCAGAGATTCGCCGTCAGATCCTCCGGGAAATCTCAATTCTTCGCCGGACGGAATCTCCTTAC
GTTATCAAGTGTCATGGAGTTATTGATATGCCCGGCGGGGATATCGGTATTCTTATGGAGTATATGAACGCCGGTACATTAGAAAATCTACTTAA
ATCACAATTAACTTTCTCCGAACTCTGTTTAGCGAGAATCGCTAAGCAAGTGCTTGGTGGATTAGACTATTTGCATAGTCACAAAATCATTCACA
GAGATCTAAAACCTTCGAACCTTTTAGTGAATCGTGAGATGGAGGTGAAAATCGCTGATTTCGGAGTGAGCAAAATCATGGGAAGGACTTTGGAT
CCTTGCAATTCATACGTTGGAACTTGTGCGTATATGAGCCCAGAAAGATTTGATCCAGACACTTATGGAGGTAACTACAATGGTTACGCAGCTGA
TATATGGAGCTTAGGTCTCACTTTAATGGAACTGTATATGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390086] SGN-U564043 Tomato 200607 Build 2 41 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191412 [Download][View] Facility Assigned ID: FA0AAD5AB01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.986 Expected Error Rate: 0.0038 Quality Trim Threshold: 14.5