EST details — SGN-E390196

Search information 
Request: 390196Match: SGN-E390196
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183333Clone name: TUS-41-O11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183333 is on microarray TOM1 spot ID 1-1-6.3.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183333 [TUS-41-O11] Trace: SGN-T191523 EST: SGN-E390197 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390196Length: 717 bp (885 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390196 [] (trimmed) CAAGTAAGTCTTATGCACTTTCTTAAACTCTGTTTTAAGTCAAAAACCTAACAAATAAATTAAAACAAAGGGAGTACTAGAGTTGTTGCAGGATC
TAAAGAACATGGTCTAAAGAGGATTCCAACTTCAATGTCCAGGTAGCAAAGTACATCTTCATCTTCACAGAGGTAAAACCAAAAACGAAATTGAA
AGATTCAAACAGCGATGAAATTTCACTCAAATTTCATGATCAATTCAAATGAATAAAAAACGTCAAGCCGAATCGATGAGATTGTTGTTAAGAGA
ACAATCTTAATACCTGATCTATTGTATACACCAGCAGCCAACTAAATATAACAAGCAAAAGTGTGGCAGCTAGATAAGCCAGATAGCATTTTATT
AAGAATCAAAAGATCTTCACAATTCTGGCTTCATGTTCTCGCATTCCTCTCTTATTGACTGGAAAAGAATAGAGGAGAGGTATCGTTCCCCATAG
CTTGGAAATACAACCCCAATAAGCTTTCCTGCATTCTCAGGTCTCTTTCCAACTTGAATGGCAGCAAGAGCAGCTGCTCCGGAAGAAATCCCAAC
CAACAACCCTTCTTGTAGGGCTAATTGCTTCGCAGTTTCAACAGCTTCGTCACTCGATATCTCTATCACTTCATCCATTACATCTTGATCCAAGT
TTCCTGGAATAAAACCTGCTCCAATCCCTTGAATTTTGTGAGGGCCAGGTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390196] SGN-U565168 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191522 [Download][View] Facility Assigned ID: FA0AAD29AH06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.955 Expected Error Rate: 0.0041 Quality Trim Threshold: 14.5