Notice: After server upgrades, BLAST should be back now. Apologies for any inconvenience.

EST details — SGN-E390342

Search information 
Request: 390342Match: SGN-E390342
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173788Clone name: TUS-17-A18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173788 is on microarray TOM1 spot ID 1-1-7.1.17.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5506 [cLEC-32-C12] Trace: SGN-T29815 EST: SGN-E207602 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390342Length: 424 bp (855 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390342 [] (trimmed) GCCATCTTCTACTAATAGATATCTGGAAGAGAAAAGCTGTACAGAGAGATTTACATTAAGAATGTTATAATTATAAAAAAAAGATATTAGTTTCA
GCCCTTCCACTAAAATGGTCATTTTAAGGATGTATTTCCCATCATCCTGGCTTCATTTGCTGTTAATCCATATTTTAAGAACCACAGCAAGCTGA
TTTTTGAGCGCCTTGTGAAAATACTGCTCCCTGGTCCGGTTGACTTATCCTGAAGGTCTGAGGCTCAGCCTTTGAGTCATATTCGGCAAGCCTTT
GTTTTATATCCCGAGCTATGGAAAAGAAAACCTCCTCAACATTCATATTTGTCTTGGCACTAATTTCAAAAAATTTAATGCCTTATTCATCTGCA
AGGGCTTGGCCCCTTGGATGTAGGAACAGCCCTTTTTGCTTTCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390342] SGN-U578937 Tomato 200607 Build 2 22 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191668 [Download][View] Facility Assigned ID: FA0AAD5BA09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.948 Expected Error Rate: 0.0311 Quality Trim Threshold: 14.5