EST details — SGN-E390520

Search information 
Request: 390520Match: SGN-E390520
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182683Clone name: TUS-40-D9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182683 is on microarray TOM1 spot ID 1-1-8.4.5.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C123814 [cTOC-13-J3] Trace: SGN-T138285 EST: SGN-E325145 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E390520Length: 535 bp (868 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E390520 [] (trimmed) GCTCAATCTATAGCAATTATGAAGCCATCTTATATTACTTTTTCAAACTTTATGCTATTAATATTTTTAACCTTATGTTATGTCACAAATGCAAG
TCAAGATGATCCAATAATTCTCAATAGATACCAAAATTGGGTCAAAAAAATACAGAAGAAAATACCAAAATGAAGCTGAATGGAATATGAGATTT
GGAATTTATCAATCAAATATTCAATTCATTGATTTCTTCAATTCACTAAACCTTTCTTATAGCCTTACTGATAATGCTTTTGCGGACATGACAAA
TCGAGAATTTAATTCTATTTATTTAGGTTACGAAAAACCAATACAAGAACAAAAAGACATTAATAATGTTACGTCGTATGATATATCCACATTAC
CGATTGGTGTCGATTGGAGGAAGGATGGGGTTGTTACACCAATCAAGGATCAAAAAAGTTGCGGAAGTTGTTGGGCATTTTCAGCAGTAGCAGCA
ATAGAGGGCATCAACAAGATCAAAACAGGAAAACTTGTGTCACTATCAGAAACAACAACT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390520] SGN-U583466 Tomato 200607 Build 2 9 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191846 [Download][View] Facility Assigned ID: FA0AAD28CB05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.937 Expected Error Rate: 0.0039 Quality Trim Threshold: 14.5