EST details — SGN-E390626

Search information 
Request: 390626Match: SGN-E390626
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185492Clone name: TUS-47-I10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185492 is on microarray TOM1 spot ID 1-1-7.1.9.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C79152 [cLES-7-P18] Trace: SGN-T98978 EST: SGN-E288222 Direction: 5' Facility: TIGR
Clone: SGN-C185492 [TUS-47-I10] Trace: SGN-T191953 EST: SGN-E390627 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390626Length: 648 bp (886 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390626 [] (trimmed) CAAGTAATGTACATCACACTTCCATTGAACTTAATAAAATAAAACATACATTATTACGATCGGGTTGTAATATAACAAACCTCCAAAGTTCTATT
ACAAGATTTCAATTACAATACTAAAAAAACACACAAAGAAGCTAAAGAGAGAAACAAACACAATCCGTGATTTAAGCAGGATCAATATCGACTTA
ATTATCTTATTCTTGTCCACATAATTGTGCTACTACTATATATTATGATGTGGAAAACAAATCTCTTTCATTAACGTCACTTCACCTTGGAGCAG
TCAACAAAGGGGCTGATCTCAAAAGGAATCTTGACACCACAAACTCCAAAAAGACCAGCAGCTTTACCAAAATCAATGCCTTTAATAGTATTAGC
AGCTTTTTTGACACACTTACATGATTTTCTACGTTCATGTGGTGTCTTACAAAGCTTAAGCAAATCTTTAATGACACCACAACAGCCTCCTATTG
GCCCACGGTTCTGCAAATAAGGAAGGCAATTCACTACCCCAACCTGAATTTGGCCACAAGTCACTGCCTTTGCATGGGGTGCATTTGTAATCAAC
ATGCATAAAACCACCAAACAAGCAATCTTGACAAACATTTTCTTTCTTTAGAAAAGAAATATAATTGAGAGAATAGTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390626] SGN-U584460 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191952 [Download][View] Facility Assigned ID: FA0AAD35BE05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.942 Expected Error Rate: 0.0071 Quality Trim Threshold: 12.5