EST details — SGN-E390688
Search information |
Request: 390688 | Match: SGN-E390688 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185094 | Clone name: TUS-46-H20 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185094 is on microarray TOM1 spot ID 1-1-5.4.11.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C87306 [cLET-45-O5] | Trace: SGN-T111580 | EST: SGN-E300408 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185094 [TUS-46-H20] | Trace: SGN-T192264 | EST: SGN-E390938 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E390688 | Length: 691 bp (860 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E390688 [] (trimmed)
TCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTC
TCACCATCTGCCTCACAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCC
TGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGAC
TTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCT
GAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGG
CAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTG
GACCTCTTGGTGAGGTTGTCGACCCATTCTACCCTGGTGGGCTCTTCGAACCATTAGGCCTTGCTGAAGAACCCGAAGGCATTTGCTGAGCTCAA
GGTAAAGGAAATCAAAAACGGAAAAC
TCACCATCTGCCTCACAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCC
TGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGAC
TTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCT
GAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGG
CAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTG
GACCTCTTGGTGAGGTTGTCGACCCATTCTACCCTGGTGGGCTCTTCGAACCATTAGGCCTTGCTGAAGAACCCGAAGGCATTTGCTGAGCTCAA
GGTAAAGGAAATCAAAAACGGAAAAC
Unigenes |
Current Unigene builds | |||||
[SGN-E390688] | SGN-U579099 | Tomato 200607 | Build 2 | 204 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T192014 [Download][View] | Facility Assigned ID: FA0AAD34DD10RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.975 | Expected Error Rate: 0.0086 | Quality Trim Threshold: 14.5 |