EST details — SGN-E390836
Search information |
Request: 390836 | Match: SGN-E390836 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185304 | Clone name: TUS-47-A14 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185304 is on microarray TOM1 spot ID 1-1-3.1.9.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C72988 [cLER-2-M4] | Trace: SGN-T92492 | EST: SGN-E278774 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185304 [TUS-47-A14] | Trace: SGN-T191920 | EST: SGN-E390594 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E390836 | Length: 702 bp (876 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E390836 [] (trimmed)
ACCAGAAAGTCCATTCCATTAGAAATCTATTAGTACATGGGAGAGTTTTACAAGGTGTTTTTGGCTAATATACTATATGATAAATAGTACAATTT
AATTAGGGAAAATGCCTTTAGGGATAATAACATCCCCAATGTTGTTGTGCCATGGGTCAGCCAAGTGAGTTGCCAAGTTCTCCAATGGTCCTGTT
CCTGGATATGCTGATTGTTGTACACAAAATCCCACAAATGCCAACAATGCAAGACGACCATTCTTGATTTCCTTGACTTTGAGTTCTTCAAATTT
AGCAGGGTCTTTAGAGTAGCCCAATGGGTCAAAAGCCCCACCAGGGTACTTCTTCTTTTCTGAATCTTTTTCCATACTCCTTTGGTGTTCTACAA
AAGCTATGGCTAGAAATTCAATAGCCAAAATAGTAGGAAGTGTTCCCCATGGAACAGGCTGGCCCAAATATGTAGCTTGTCCACCAGGAATGGCT
GCCCATTCTTGGGCCTTGACCCAATTACCTAAGCCCAATGCCTCTGGTACTATGATTCCGGGAACAGCAAGCATAGCCCATCTGCAATGAATAAG
TTCAGATTCTTTGTATCTTTCCAAATTTGCAGGTACTTCTCCTAAACCAAGTGGATCAAATCCAAAATCTCCGGGGGCTGAGCCGTCGAGGTAAG
ATGGACGGGGCTGCCCGGGCATCCAATCAGCTGACAT
AATTAGGGAAAATGCCTTTAGGGATAATAACATCCCCAATGTTGTTGTGCCATGGGTCAGCCAAGTGAGTTGCCAAGTTCTCCAATGGTCCTGTT
CCTGGATATGCTGATTGTTGTACACAAAATCCCACAAATGCCAACAATGCAAGACGACCATTCTTGATTTCCTTGACTTTGAGTTCTTCAAATTT
AGCAGGGTCTTTAGAGTAGCCCAATGGGTCAAAAGCCCCACCAGGGTACTTCTTCTTTTCTGAATCTTTTTCCATACTCCTTTGGTGTTCTACAA
AAGCTATGGCTAGAAATTCAATAGCCAAAATAGTAGGAAGTGTTCCCCATGGAACAGGCTGGCCCAAATATGTAGCTTGTCCACCAGGAATGGCT
GCCCATTCTTGGGCCTTGACCCAATTACCTAAGCCCAATGCCTCTGGTACTATGATTCCGGGAACAGCAAGCATAGCCCATCTGCAATGAATAAG
TTCAGATTCTTTGTATCTTTCCAAATTTGCAGGTACTTCTCCTAAACCAAGTGGATCAAATCCAAAATCTCCGGGGGCTGAGCCGTCGAGGTAAG
ATGGACGGGGCTGCCCGGGCATCCAATCAGCTGACAT
Unigenes |
Current Unigene builds | |||||
[SGN-E390836] | SGN-U580126 | Tomato 200607 | Build 2 | 162 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T192162 [Download][View] | Facility Assigned ID: FA0AAD35BA07FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.961 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |