EST details — SGN-E390844

Search information 
Request: 390844Match: SGN-E390844
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185350Clone name: TUS-47-C12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185350 is on microarray TOM1 spot ID 1-1-5.3.9.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C69630 [cLER-12-B6] Trace: SGN-T94516 EST: SGN-E283549 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E390844Length: 615 bp (860 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E390844 [] (trimmed) AAAATTCATCACCCCCCATGGCTTCGTTATCCCTAATCTCACCTCACTCTCCTTCTTCTTCTTCTTCTTCTACTCTCCGTCACAGTTCCATTATT
GGCACCCGTCTTCCTTCCATCTTCTTGCGCAACCCCACTATCCGCATTCGCTCCACAACCCCTTCAATTAAAGCCTTCTCTGCACCCGTTCCTTC
ACCTTTAACCCAAGATGAACTTAAGAAACTAGCAGCCGATAAGGCCGTTGAGTATGTCAAAAGTGGAATGGTCCTTGGTTTAGGCACTGGGTCAA
CAGCAGCTTTCGTTGTCGCTAAATTGGGTGAGCTTCTTTCATCGGGCCAACTCACGAACATTGTAGGAGTTCCCACTTCAAAGCGTACTGAAGAA
CAAGCTTTGTCGCTTAACATCCCGTTATCTACACTTGACGACCACCCACATATTGATCTTGCTATTGATGGTGCTGATGAGGTCGACCCGAATCT
CGACCTAGTCAAGGGTCGAGGAGGAGCTCTTTTAAGGGAGAAGATGGTGGAGGCCGCGTCTGATAAGTTTGTTGTTGTGGTCGATGATTCGAAGC
TTGTTTCGGGTCTTGGTGGATCCGGGTTGGCTATGCCGGTTAAGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390844] SGN-U570787 Tomato 200607 Build 2 51 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192170 [Download][View] Facility Assigned ID: FA0AAD35BB06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0126 Quality Trim Threshold: 12.5