EST details — SGN-E390878

Search information 
Request: 390878Match: SGN-E390878
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185590Clone name: TUS-47-M12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185590 is on microarray TOM1 spot ID 1-1-5.1.9.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14172 [cLEC-7-B21] Trace: SGN-T25290 EST: SGN-E202008 Direction: 5' Facility: TIGR
Clone: SGN-C185590 [TUS-47-M12] Trace: SGN-T197608 EST: SGN-E396282 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390878Length: 621 bp (875 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390878 [] (trimmed) ACTCATTTGTGTATCCAAAAATTATATTAACTAGTGAAATAAAGATAAATCTTATTACATTCAACTTTAATATATTTCAATTGAATTTAGAAAAA
TCCAATTTTTATTGCCACACAAAATCTTGAAATTCATTTGAGGTGTACTCATTTTGAAGCATCAACAGGCTGAATGTAGGCTCGATAACGGATAA
GCAATTCATCTCTTGAAGGAAAATATTCCTTGTTTTGGATGCAATATTCATCTCTCCAAGCACAAAAATTTGGAAATTTTTCACTTGTCGCTAAA
ACGACTCCAGATACTTCTTCAAGAATTCCCAAATAAAGTGCTGCACCATTTGCAACAATATCAGCAAATCCAAATTTGTCACCAACAAAGTACTT
CTTGTCCTTGAACTCATTATCAAGAATTTTCAACATCTCATAAGCTTCCTCTTTAGCTTTCTCTTGTTCCTCTCCTTTGAAGAAAAAACTTTTCC
ACACTGCTGACCCCTTATCATCGACATATTTAGCCCAAAAACGCGCTAAAGCTCGATCATAAGGGTCTTTAGGCAAAATGGAAGGGCCTTCAAAT
GCCTCATCAATGTATTCAAGAATGACCATAGACTCACAAATGGGCTTGCCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390878] SGN-U579357 Tomato 200607 Build 2 59 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192204 [Download][View] Facility Assigned ID: FA0AAD35BG06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.928 Expected Error Rate: 0.0060 Quality Trim Threshold: 14.5