EST details — SGN-E390977

Search information 
Request: 390977Match: SGN-E390977
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185387Clone name: TUS-47-E1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185387 is on microarray TOM1 spot ID 1-1-8.1.10.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70964 [cLER-16-H19] Trace: SGN-T95703 EST: SGN-E284430 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E390977Length: 696 bp (898 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E390977 [] (trimmed) TTTTGGAAGAAAAAATAATGGTAGACAATAATCGAGCAAAAGAACTCAAGGCTTTCGATGACACAAAGGCCGGTGTAAAAGGACTAGTCGATTCA
GGGATAGTTCATATTCCCGAGATCTTCATTACACCATCCTTAACAGAAAAAGAGTTCAGTGTTGAAAATCTCGATTCAGGCTCAGACATAGTCAG
CGTTCAGATCCCAGTTATAGATTTAAAGGATATGAATGGAGACGATTTTCAACGTAGGAGAGTTGTTGAAGAGGTAGGTGAGGCATGTAAGAGTT
GGGGATTTTTTCAAGTTGTGAATCATGGTGTGCCACAACATGTTATGGATGAGATGATTGGTGGAATTAGATGTTTTCATGAGCAACCAAATGAT
ATAAAGGAGGAGTTTTACTCAATGGATCCTATGAAGAAGGTGATGTTTAATAGTAATTTTGATCTTTATCAAGCTAAGGTTGCAAATTGGAGGGA
TACATTAGCTTGTCTCATGGCTCCTAATCCTCCTACTAATGATGAATTACCACAAGTATGTAGGGAGGAATTACTTCAATATTCTCAACATGTTA
GAAAGTTGGGCCTTACAATATTTGAGTTACTAGCAGAAGAACTTGGGCTTAGGCCCAATCACTTATTGGACATGGACTGTGCAAAAGGCCAATTC
ATAATTAGTCATTATTATCCACCTTGTCCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390977] SGN-U578883 Tomato 200607 Build 2 50 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192303 [Download][View] Facility Assigned ID: FA0AAD35AC01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0049 Quality Trim Threshold: 14.5