EST details — SGN-E390996
Search information |
Request: 390996 | Match: SGN-E390996 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185415 | Clone name: TUS-47-F5 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185415 is on microarray TOM1 spot ID 1-1-4.2.10.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C72499 [cLER-20-F3] | Trace: SGN-T96759 | EST: SGN-E285187 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185415 [TUS-47-F5] | Trace: SGN-T192321 | EST: SGN-E390995 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E390996 | Length: 434 bp (917 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E390996 [] (trimmed)
AATTCAGAAGGGCATGCTTCGTCCATTTCTTCCTTCCAAGTTTCCTTTTATTCCTACTACCGACGTGGCGGGAGAGGTTGTTGAGGTAGGATCTA
ATGTAAAAAGTTTCAAGGCTGGTGACAAGGTTGTGGCTATGCTCAGTACCAAGAGTGGAGGTGGATTGGCTGAATATGTGGTACCTAAGGATAGT
TTGACTGTTTCAAGACCCGCTGAAGTATCAGCTGCAGAAGGTGCAGGTCTTGTTATCGCAGGTCTTACAGCTCTTCAGGCCCTCGTCAATCCTGC
TGAGGTTAAGCTTGATGGAACTGGACCCCGGAAGAACATTCTAGTTACGGCTGCTTCGGGTGGTGTAGGTCACTATGCTGTTCAATTGGCAAAAC
TTGGTAACGCCCATGTTACTGCCACCTGTGGAGCCCGCAACATTGATTTTGTGA
ATGTAAAAAGTTTCAAGGCTGGTGACAAGGTTGTGGCTATGCTCAGTACCAAGAGTGGAGGTGGATTGGCTGAATATGTGGTACCTAAGGATAGT
TTGACTGTTTCAAGACCCGCTGAAGTATCAGCTGCAGAAGGTGCAGGTCTTGTTATCGCAGGTCTTACAGCTCTTCAGGCCCTCGTCAATCCTGC
TGAGGTTAAGCTTGATGGAACTGGACCCCGGAAGAACATTCTAGTTACGGCTGCTTCGGGTGGTGTAGGTCACTATGCTGTTCAATTGGCAAAAC
TTGGTAACGCCCATGTTACTGCCACCTGTGGAGCCCGCAACATTGATTTTGTGA
Unigenes |
Current Unigene builds | |||||
[SGN-E390996] | SGN-U581242 | Tomato 200607 | Build 2 | 163 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T192322 [Download][View] | Facility Assigned ID: FA0AAD35CC03RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.982 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |