EST details — SGN-E391162
Search information |
Request: 391162 | Match: SGN-E391162 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185510 | Clone name: TUS-47-J4 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185510 is on microarray TOM1 spot ID 1-1-5.2.10.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C79613 [cLES-9-I4] | Trace: SGN-T99321 | EST: SGN-E287502 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185510 [TUS-47-J4] | Trace: SGN-T192673 | EST: SGN-E391347 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E391162 | Length: 633 bp (895 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E391162 [] (trimmed)
TTTTTTTCTACCATCTCACAATTTTTCTTCCCCTTCAGCCCAATGTCGCCGGCGACTTTCTGACCTGCTCGATAACCTCCGTCTCTCTCTCCGTT
CGAAACAGATTTCTAGGGTTTTGGATTGTTGATTCAAATTTATACATATCGGAATAAGACGATGGCAGCTCCACCAGCTAGGGCTCGAGCAGATT
ATGATTATCTCATCAAGCTTCTCCTCATTGGCGATAGCGGTGTGGGAAAGAGTTGTTTACTTCTGAGATTCTCAGACGGATCCTTCACAACAAGT
TTCATCACAACTATTGGAATTGATTTTAAGATAAGAACAATTGAACTTGATGGCAAGCGGATTAAGTTACAAATTTGGGATACAGCTGGTCAAGA
GCGTTTCCGCACTATCACAACAGCGTATTACCGAGGAGCAATGGGGATTCTGCTGGTGTATGATGTCACGGACGAGTCTTCTTTCAATAACATCA
GGAACTGGATTCGCAACATAGAGCAGCATGCTTCTGATAATGTCAACAAGATTTTGGTCGGGAACAAGGCTGATATGGATGAAAGCAAAAGGGCT
GTGCCAACTTCCAAAGGTCAAGCTCTTGCTGATGAATATGGCATTAAGTTCTTTGAAACAAGT
CGAAACAGATTTCTAGGGTTTTGGATTGTTGATTCAAATTTATACATATCGGAATAAGACGATGGCAGCTCCACCAGCTAGGGCTCGAGCAGATT
ATGATTATCTCATCAAGCTTCTCCTCATTGGCGATAGCGGTGTGGGAAAGAGTTGTTTACTTCTGAGATTCTCAGACGGATCCTTCACAACAAGT
TTCATCACAACTATTGGAATTGATTTTAAGATAAGAACAATTGAACTTGATGGCAAGCGGATTAAGTTACAAATTTGGGATACAGCTGGTCAAGA
GCGTTTCCGCACTATCACAACAGCGTATTACCGAGGAGCAATGGGGATTCTGCTGGTGTATGATGTCACGGACGAGTCTTCTTTCAATAACATCA
GGAACTGGATTCGCAACATAGAGCAGCATGCTTCTGATAATGTCAACAAGATTTTGGTCGGGAACAAGGCTGATATGGATGAAAGCAAAAGGGCT
GTGCCAACTTCCAAAGGTCAAGCTCTTGCTGATGAATATGGCATTAAGTTCTTTGAAACAAGT
Unigenes |
Current Unigene builds | |||||
[SGN-E391162] | SGN-U578346 | Tomato 200607 | Build 2 | 43 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T192488 [Download][View] | Facility Assigned ID: FA0AAD35DE02RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.978 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |