EST details — SGN-E391778

Search information 
Request: 391778Match: SGN-E391778
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176764Clone name: TUS-24-M18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176764 is on microarray TOM1 spot ID 1-1-7.1.9.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27831 [cLEF-45-K8] Trace: SGN-T61430 EST: SGN-E246695 Direction: 5' Facility: TIGR
Clone: SGN-C176764 [TUS-24-M18] Trace: SGN-T193105 EST: SGN-E391779 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E391778Length: 594 bp (854 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E391778 [] (trimmed) ATGGAGAAGAAGTTGTAAATCTATAGAAAAAATACACTAGCAAACGTGTTTCTTATTAACCCTCTAATGTTACAGTCAACACCATCTTTGGCAAA
ACTATAGATCTGCCAAATGCCACAAACCGGTGGAAAATTTTCCAGCCAGTCTCCGAGTATAAATACAACGAAAAAAAAGAGTGTTTTCTCTACTT
CTAAAGGATAAAAATCAGTAGAGCAGTTGAATTTGCTCATTCCGAGCCAACCTAAAATAGCCTAAAGCGAGTGATGTATCCCATCATTTATGAAA
AAACAACACCCATCTTCTTAGCAAATTCATCTTCATCATCATCCTCATCCAGGTATTCTTCACCAGCGTCAATATTCTCACCTTCGTCTAAATTG
TAATCTTCACCATCAACCTGCTCATAATCATAGTCTCCATCTCTTTGATCATGACCTTCAGCTTCAGGGTCTTGATCGTCTGCTTCTTCCATAAT
CATCCCTTCTTCAGCTTCAAGTTCATTTGCAACATGGTGAGCAGGAGATTTATGAATCAGCTAATACACCAAATGGAGGATCAGACTCTTCCTTT
TTGCTCAAAGTCAGTATTGTTCCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391778] SGN-U571369 Tomato 200607 Build 2 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193104 [Download][View] Facility Assigned ID: FA0AAD12BG09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0066 Quality Trim Threshold: 14.5