EST details — SGN-E392060

Search information 
Request: 392060Match: SGN-E392060
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176683Clone name: TUS-24-J9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176683 is on microarray TOM1 spot ID 1-1-8.2.9.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27240 [cLEF-42-P18] Trace: SGN-T60690 EST: SGN-E247646 Direction: 5' Facility: TIGR
Clone: SGN-C176683 [TUS-24-J9] Trace: SGN-T193139 EST: SGN-E391813 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392060Length: 663 bp (871 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392060 [] (trimmed) TTTTTTTTTACAGAGAAAAGCGGAAAAAGAAAACTATATTTTTCAGTCCCCAAAAAACAAATAAAATATATAGAACATGTTAAAAGAGTACAACT
GGAACTATGCAAAATTCCAGAGACTTATCAGTAATTCTCTACAATTTTTGTAGGTAGAAAATACAGGGATACTTCTATGATATACTCAAACTCTC
AACTTTCTAATAAAAGGCCTTGGATAAAATAGGCACTTCCTTTTTTATTTTGAGAACTATATAGGCATGTTAAATGCTAGTATATAATCTGAACT
CGACCCAAAAGGTGAACGATAAAAAATGACTCTACCATGTGTATGTGATATAGCTACCAGGACTGTAGATGTTTGGGAAGTTCTCTCCAGATCAG
ATTGAAGCCGGAGACTAGCAAACTCTGTGCAGGTATGATGTTGAAAGCAGCTGGATCAGGGATTCTTGTATCTGCCGAGGACAGCTGACGCCTCC
ACAATCATAGTGTTTTGATTAACAATAGAAGAATCACTATCAAGAGTGAGAACTCAACCACAAACTTTGGGTTTGATACGCGTTCAAGCAACTGC
TGCCACCTGTAAGTTCAACCAAATAAGAGCTGCTGGTAAAGCCTGTTTACCATTTCCAGAATGTTTCACCCACATTCAAAATGGTGAACTATA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392060] SGN-U571323 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193386 [Download][View] Facility Assigned ID: FA0AAD12CE05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.961 Expected Error Rate: 0.0069 Quality Trim Threshold: 14.5