EST details — SGN-E392060
Search information |
Request: 392060 | Match: SGN-E392060 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C176683 | Clone name: TUS-24-J9 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176683 is on microarray TOM1 spot ID 1-1-8.2.9.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C27240 [cLEF-42-P18] | Trace: SGN-T60690 | EST: SGN-E247646 | Direction: 5' | Facility: TIGR |
Clone: SGN-C176683 [TUS-24-J9] | Trace: SGN-T193139 | EST: SGN-E391813 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E392060 | Length: 663 bp (871 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E392060 [] (trimmed)
TTTTTTTTTACAGAGAAAAGCGGAAAAAGAAAACTATATTTTTCAGTCCCCAAAAAACAAATAAAATATATAGAACATGTTAAAAGAGTACAACT
GGAACTATGCAAAATTCCAGAGACTTATCAGTAATTCTCTACAATTTTTGTAGGTAGAAAATACAGGGATACTTCTATGATATACTCAAACTCTC
AACTTTCTAATAAAAGGCCTTGGATAAAATAGGCACTTCCTTTTTTATTTTGAGAACTATATAGGCATGTTAAATGCTAGTATATAATCTGAACT
CGACCCAAAAGGTGAACGATAAAAAATGACTCTACCATGTGTATGTGATATAGCTACCAGGACTGTAGATGTTTGGGAAGTTCTCTCCAGATCAG
ATTGAAGCCGGAGACTAGCAAACTCTGTGCAGGTATGATGTTGAAAGCAGCTGGATCAGGGATTCTTGTATCTGCCGAGGACAGCTGACGCCTCC
ACAATCATAGTGTTTTGATTAACAATAGAAGAATCACTATCAAGAGTGAGAACTCAACCACAAACTTTGGGTTTGATACGCGTTCAAGCAACTGC
TGCCACCTGTAAGTTCAACCAAATAAGAGCTGCTGGTAAAGCCTGTTTACCATTTCCAGAATGTTTCACCCACATTCAAAATGGTGAACTATA
GGAACTATGCAAAATTCCAGAGACTTATCAGTAATTCTCTACAATTTTTGTAGGTAGAAAATACAGGGATACTTCTATGATATACTCAAACTCTC
AACTTTCTAATAAAAGGCCTTGGATAAAATAGGCACTTCCTTTTTTATTTTGAGAACTATATAGGCATGTTAAATGCTAGTATATAATCTGAACT
CGACCCAAAAGGTGAACGATAAAAAATGACTCTACCATGTGTATGTGATATAGCTACCAGGACTGTAGATGTTTGGGAAGTTCTCTCCAGATCAG
ATTGAAGCCGGAGACTAGCAAACTCTGTGCAGGTATGATGTTGAAAGCAGCTGGATCAGGGATTCTTGTATCTGCCGAGGACAGCTGACGCCTCC
ACAATCATAGTGTTTTGATTAACAATAGAAGAATCACTATCAAGAGTGAGAACTCAACCACAAACTTTGGGTTTGATACGCGTTCAAGCAACTGC
TGCCACCTGTAAGTTCAACCAAATAAGAGCTGCTGGTAAAGCCTGTTTACCATTTCCAGAATGTTTCACCCACATTCAAAATGGTGAACTATA
Unigenes |
Current Unigene builds | |||||
[SGN-E392060] | SGN-U571323 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T193386 [Download][View] | Facility Assigned ID: FA0AAD12CE05FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.961 | Expected Error Rate: 0.0069 | Quality Trim Threshold: 14.5 |