EST details — SGN-E392279

Search information 
Request: 392279Match: SGN-E392279
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180740Clone name: TUS-35-C10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180740 is on microarray TOM1 spot ID 1-1-7.3.17.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C38027 [cLEG-44-A24] Trace: SGN-T72927 EST: SGN-E257026 Direction: 5' Facility: TIGR
Clone: SGN-C180740 [TUS-35-C10] Trace: SGN-T193852 EST: SGN-E392526 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392279Length: 594 bp (861 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E392279 [] (trimmed) CTGGAAAAGTTCTCATGAAATGCTTCCTTTCTGGAATGCCTGATCTGAAGTTGGGCTTAAATGATAAAATTGGTCTTGAGAAAGAGTCACAACTC
AAGTCCCGTCCGACTAAGAGCGGTAAAACTATTGAGCTCGATGATGTTACTTTCCACCAATGTGTAAATTTGACGAGATTCAACTCAGAGAAGAC
CGTCAGTTTTGTCCCGCCTGATGGTGAATTTGAATTAATGAAGTACCGCATCACTGAAGGAGTAAATCTTCCTTTCCGTGTATTACCAACTATCA
AAGAATTAGGCCGTACACGTATGGAAGTGAATGTTAAGGTTAAGAGTGTGTTTGGTGCAAAAATGTTTGCTCTTGGAGTAGTTATTAAAATTCCA
GTGCCAAAGCAAACTGCTAAAACAAACTTCCAGGTGACGTCGGGGAGAGCAAAGTATAATGCAGCCATTGACTGTTTGGTTTGGAAGATACGAAA
ATTTCCAGGGCAAACTGAATCAACATTGAGTGCTGAGGTTGAGTTAATTTCGACAATTACAGAGAAAAAGTCCTTGACTCGTCCGCCAATTCAAA
TGGAATTTCAGGGTTCCCCATGTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392279] SGN-U566667 Tomato 200607 Build 2 19 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193605 [Download][View] Facility Assigned ID: FA0AAD23BB05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0059 Quality Trim Threshold: 14.5