EST details — SGN-E392425
Search information |
Request: 392425 | Match: SGN-E392425 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C180318 | Clone name: TUS-34-A20 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180318 is on microarray TOM1 spot ID 1-1-5.1.19.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C28329 [cLEF-47-F14] | Trace: SGN-T62130 | EST: SGN-E248101 | Direction: 5' | Facility: TIGR |
Clone: SGN-C180318 [TUS-34-A20] | Trace: SGN-T193752 | EST: SGN-E392426 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E392425 | Length: 551 bp (834 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E392425 [] (trimmed)
GGAAAAAAATTTTGCCTCCATATCCCCTAAAATTCAAAATCCCACTGAACAAAAAAATGTTTGAATTTTGGAAAACCTTTTACATACAAAAAAAC
CAAAATAAAGGGAACCCAACCCCCTTTTATAAAAAACCTCCCCAAAACCAAAAAAAACCATGGGCTTTTCTGGCAAAAATTTCTGGGAAATGACC
CAACATACAAACCTTTTTCAAAATTTCTGTTGGTTTCCGGCCCCACCAAGCCGGGTTGGGGCCTCCTTTTCCCAATCCAAAACCCCCTGATGTTT
TCCCGGCCCCCTTCCCCCCCTTTTTTCCCCCAAGTTTAACTCCTGCAAAAAAATTTCCCCCCCCCCCTCCAACTTCCTTTTTGAAGAACCCCTCC
CCGGTTTTTAAGAAAAAAAAATCTCCATGCCACCGCCTGGGTCCGGGGAAAAAAACCCCGATTCTGGAAAAACCCCATCCAAATGGAAATAAAAC
CGTCCCCTAATGAAAAGCTTGCCCAAAATTGGCATGCCCTCCTCCTTTTTTGCCCTGTAATGATTCGGCTTTTTAA
CAAAATAAAGGGAACCCAACCCCCTTTTATAAAAAACCTCCCCAAAACCAAAAAAAACCATGGGCTTTTCTGGCAAAAATTTCTGGGAAATGACC
CAACATACAAACCTTTTTCAAAATTTCTGTTGGTTTCCGGCCCCACCAAGCCGGGTTGGGGCCTCCTTTTCCCAATCCAAAACCCCCTGATGTTT
TCCCGGCCCCCTTCCCCCCCTTTTTTCCCCCAAGTTTAACTCCTGCAAAAAAATTTCCCCCCCCCCCTCCAACTTCCTTTTTGAAGAACCCCTCC
CCGGTTTTTAAGAAAAAAAAATCTCCATGCCACCGCCTGGGTCCGGGGAAAAAAACCCCGATTCTGGAAAAACCCCATCCAAATGGAAATAAAAC
CGTCCCCTAATGAAAAGCTTGCCCAAAATTGGCATGCCCTCCTCCTTTTTTGCCCTGTAATGATTCGGCTTTTTAA
Unigenes |
Current Unigene builds | |||||
[SGN-E392425] | SGN-U598132 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T193751 [Download][View] | Facility Assigned ID: FA0AAD22BA10FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.861 | Expected Error Rate: 0.0315 | Quality Trim Threshold: 14.5 |