EST details — SGN-E392425

Search information 
Request: 392425Match: SGN-E392425
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180318Clone name: TUS-34-A20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180318 is on microarray TOM1 spot ID 1-1-5.1.19.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C28329 [cLEF-47-F14] Trace: SGN-T62130 EST: SGN-E248101 Direction: 5' Facility: TIGR
Clone: SGN-C180318 [TUS-34-A20] Trace: SGN-T193752 EST: SGN-E392426 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392425Length: 551 bp (834 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392425 [] (trimmed) GGAAAAAAATTTTGCCTCCATATCCCCTAAAATTCAAAATCCCACTGAACAAAAAAATGTTTGAATTTTGGAAAACCTTTTACATACAAAAAAAC
CAAAATAAAGGGAACCCAACCCCCTTTTATAAAAAACCTCCCCAAAACCAAAAAAAACCATGGGCTTTTCTGGCAAAAATTTCTGGGAAATGACC
CAACATACAAACCTTTTTCAAAATTTCTGTTGGTTTCCGGCCCCACCAAGCCGGGTTGGGGCCTCCTTTTCCCAATCCAAAACCCCCTGATGTTT
TCCCGGCCCCCTTCCCCCCCTTTTTTCCCCCAAGTTTAACTCCTGCAAAAAAATTTCCCCCCCCCCCTCCAACTTCCTTTTTGAAGAACCCCTCC
CCGGTTTTTAAGAAAAAAAAATCTCCATGCCACCGCCTGGGTCCGGGGAAAAAAACCCCGATTCTGGAAAAACCCCATCCAAATGGAAATAAAAC
CGTCCCCTAATGAAAAGCTTGCCCAAAATTGGCATGCCCTCCTCCTTTTTTGCCCTGTAATGATTCGGCTTTTTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392425] SGN-U598132 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193751 [Download][View] Facility Assigned ID: FA0AAD22BA10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.861 Expected Error Rate: 0.0315 Quality Trim Threshold: 14.5